BEGIN:VCALENDAR
VERSION:2.0
PRODID:www.eu-parc.eu
BEGIN:VEVENT
UID:6a0274278bfd3
DTSTART;VALUE=DATE:20241007
SEQUENCE:0
TRANSP:OPAQUE
DTEND;VALUE=DATE:20241008
SUMMARY:Workshop on Implementation of FAIR PBK models in SBML using Antimon
y
CLASS:PUBLIC
DESCRIPTION:PARC organised an in-person workshop on the Implementation of F
AIR PBK Models in SBML using Antimony\, which took place from 7 to 8 Octob
er 2024 in Bilthoven\, The Netherlands\, under the scientific coordination
of Anne Zwartsen (RIVM). The course focused on the translation of physiol
ogically based kinetic (PBK) models into SBML format using Antimony\, with
an emphasis on good modelling practice\, harmonisation\, and semantic ann
otation. Participants received both theoretical guidance and practical sup
port\, including the opportunity to translate their own models during the
workshop.Training content• Reminder on developing FAIR PBK models and ap
plying good practices• Guidance on translating PBK models into SBML usin
g Antimony• Introduction to relevant software tools and packages• Trai
ning on model harmonisation and semantic annotation• Support in translat
ing a basic model and in translating participants' own modelsTarget audien
ceThe course was specifically intended for researchers working on tasks 6.
2.2 and 6.2.3 of PARC\, who are developing PBK models in R for use in T6.2
case studies.Practical detailsThe workshop was free of charge\, but parti
cipants covered their own travel\, accommodation\, and personal expenses.
Applications for this training are now closed.Training Highlights \;Tr
aining materials developed and used during the training were not made publ
icly available\, but you can find other related training resources in the
PARC Repository of Learning and Educational Materials.
X-ALT-DESC;FMTTYPE=text/html:PARC organised a
n in-person workshop on the Implem
entation of FAIR PBK Models in SBML using Antimony\, which took place
from 7 to 8 October 2024 in Bilthoven\, The Netherlands\, under the scien
tific coordination of Anne Zwartsen (RIVM). The course focused on the tran
slation of physiologically based kinetic (PBK) models into SBML format usi
ng Antimony\, with an emphasis on good modelling practice\, harmonisation\
, and semantic annotation. Participants received both theoretical guidance
and practical support\, including the opportunity to translate their own
models during the workshop.
Training content
• Reminder on developing FAIR PBK models and applying good practices
• Guidance on translating PBK models into SBML using Antimony
• In
troduction to relevant software tools and packages
• Training on mode
l harmonisation and semantic annotation
• Support in translating a ba
sic model and in translating participants' own models
Targ
et audience
The course was specifically intended for researche
rs working on tasks 6.2.2 and 6.2.3 of PARC\, who are developing PBK model
s in R for use in T6.2 case studies.
Practical details
The workshop was free of charge\, but participants covered their
own travel\, accommodation\, and personal expenses. Applications for this
training are now closed.
Training Highlights \;
Training materials developed and
used during the training were not made publicly available\, but you can f
ind other related training resources in the PARC Repository of Learning and Educational Materi
als.
PARC organised a
n in-person workshop on the Implem
entation of FAIR PBK Models in SBML using Antimony\, which took place
from 7 to 8 October 2024 in Bilthoven\, The Netherlands\, under the scien
tific coordination of Anne Zwartsen (RIVM). The course focused on the tran
slation of physiologically based kinetic (PBK) models into SBML format usi
ng Antimony\, with an emphasis on good modelling practice\, harmonisation\
, and semantic annotation. Participants received both theoretical guidance
and practical support\, including the opportunity to translate their own
models during the workshop.
Training content
• Reminder on developing FAIR PBK models and applying good practices
• Guidance on translating PBK models into SBML using Antimony
• In
troduction to relevant software tools and packages
• Training on mode
l harmonisation and semantic annotation
• Support in translating a ba
sic model and in translating participants' own models
Targ
et audience
The course was specifically intended for researche
rs working on tasks 6.2.2 and 6.2.3 of PARC\, who are developing PBK model
s in R for use in T6.2 case studies.
Practical details
The workshop was free of charge\, but participants covered their
own travel\, accommodation\, and personal expenses. Applications for this
training are now closed.
Training Highlights \;
Training materials developed and
used during the training were not made publicly available\, but you can f
ind other related training resources in the PARC Repository of Learning and Educational Materi
als.