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From prioritization to implementation: updating the PARC WP5 project portfolio through the second prioritization round
Authors
Garcia Arenas Celia, Aiello Holden Kiara, Svingen Terje, Knapen Dries, Kerdine-Römer Saadia, Lindeman Birgitte, Smith Nicola Margareta, LE HEGARAT Ludovic, Vanhaecke Tamara, RIVIERE Gilles, Marx-Stoelting Philip
Journal
Frontiers in Toxicology
Vol. 8
Keywords
Chemical hazard assessment, NAMs, New approach methods, Next-generation risk assessment, Partnership for the assessment of risks from chemicals, Regulatory readiness
Date of publication
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The Partnership for the Assessment of Risks from Chemicals (PARC) represents a joint effort among risk assessors, regulatory authorities, and the scientific community to advance the implementation of the Next Generation Risk Assessment (NGRA) in line with the objectives of the EU Chemicals Strategy for Sustainability. Addressing the challenges faced by national and European regulators in integrating data generated by innovative methodologies is central to achieving this goal.

Following an initial phase of the Partnership, in which projects were defined based on a first prioritization of methodologies, a second prioritization round was conducted with input from the Governing Board representatives of all participating entities. This second process also considered the Key Areas of Regulatory Challenge introduced by ECHA in 2023, ensuring that the evolving research agenda within PARC is closely aligned with current and future regulatory needs.

As a result, WP5 Hazard Assessment has updated its project portfolio to include four new projects that bridge identified regulatory gaps and strengthen the implementation phase of PARC. Two projects address newly prioritized endpoints, Developmental and Reproductive Toxicity and Developmental Immunotoxicity, while a third explores Sexual Dimorphism Associated with Hepatotoxicity. In addition, a transversal project, Regulatory Readiness of NAMs, was launched to accelerate the regulatory uptake of promising methods developed under WP5.

This article complements the previous PARC special issue by providing an overview of the updated WP5 project portfolio, illustrating the progression from prioritization to implementation, and highlighting how these new projects respond to evolving regulatory needs and contribute to the effective integration of NAMs into chemical risk assessment.

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Age-specific DNA methylation alterations in sperm at imprint control regions may contribute to the risk of autism spectrum disorder in offspring
Authors
Casella Eugenia, Depovere Jana, Delger Chantal, Butynets Mariia, Antczak Philipp, Price Thomas, L. Jirtle Randy, K. Murphy Susan, Hoyo Cathrine, Soubry Adelheid
Journal
Aging
Vol. 17
No. 12
2950-2988
Keywords
Epigenome, Sperm, 450K, Imprinting, Autism
Date of publication
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Research findings suggest that advanced paternal age is associated with an increased risk of autism spectrum disorder (ASD) in children. The biological process behind this father-to-child inheritance of a disease may be driven by sperm epigenetic marks. This has been suggested earlier, but the identification of epigenomic regions responsible for these age-related responses have not been further elaborated. To identify sperm-specific marks, we conducted an epigenome-wide association study in sperm from 63 men, using the Illumina 450K array. Linear regression modeling was applied to identify differentially methylated CpGs (DMCs) by age; we controlled for body mass index, patient status, and multiple testing. We found 14,622 statistically significant age-related DMCs; most (69%) were inversely correlated. We identified 95 imprinted genes and emphasized 747 age-related DMCs adjacent to an imprint control region (ICR). Altered methylation patterns in ICRs may result in disturbed expression of imprinted genes and are suspected to be at the origin of several diseases in offspring, including neurodevelopmental disorders. Mapping our results to other databases revealed the following set of imprinted genes linked to ASD: OTX1, PRDM16, PTPRN2, B4GALNT4, KCNQ1, KCNQ1OT1, DLGAP2, PLAGL1, GNAS, GRB10, MAGEL2, CDH24, and FBRSL1. Further research on these genes could help understand the contribution of paternal age on the development of autism. A change in DNA methylation levels in ICRs before conception may contribute to the heterogeneity and complexity of ASD. Measured DNA methylation effect sizes were subtle, but small epigenetic disturbances in sperm may be important on a population level, especially if men continue delaying fatherhood. Public health would benefit from the development of preventive and educational programs.

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Zebra_K+ : High-throughput analysis of acoustic startle response plasticity in zebrafish embryos and larvae in neurotoxicity testing
Authors
Tagkalidou Niki, Aljabasini Ouwais, Pujol Sergi, Porta José María, Prats Eva, Barata Carlos, Raldua Demetrio
Journal
NeuroToxicology
Vol. 112
103372
Keywords
Zebrafish larvae, Acoustic startle response, Prepulse inhibition, Habituation, Neuroplasticity, Neurotoxicity screening
Date of publication
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The acoustic startle response (ASR) is a conserved sensorimotor reflex widely used to investigate neural plasticity, sensorimotor gating, and neurotoxicity. While zebrafish is an established vertebrate model for ASR analysis, most existing platforms were originally optimized for 6 dpf larvae, which constrains applications requiring reliable assessment of earlier developmental stages. Here, we introduce Zebra_K⁺, a modular extension of the previously developed Zebra_K platform, designed for high-throughput kinematic analysis of ASR in zebrafish embryos (5 days post-fertilization, dpf) and early larvae (6–7 dpf). The system enables simultaneous quantification of ASR kinematics, sensitivity, short-term habituation, and prepulse inhibition (PPI) in up to 25 individuals. Using the NMDA receptor antagonist ketamine, the dopamine receptor agonist apomorphine, and the D₂ receptor antagonist haloperidol, we validated the platform’s ability to detect pharmacologically induced and developmentally specific alterations in startle plasticity. Ketamine reduced habituation and PPI at all developmental stages, whereas apomorphine selectively impaired PPI, an effect that was reversed by haloperidol only at 7 dpf. These results demonstrate the neurodevelopmental progression of glutamatergic and dopaminergic modulation of sensorimotor gating and establish Zebra_K⁺ as a modular technological platform that supports the development of New Approach Methods (NAMs) for neurotoxicological screening and developmental neuropharmacology.

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A regulatory perspective on the applicability of NAMs in genotoxicity and carcinogenicity assessment in EU: current practices and future directions
Authors
Bossa Cecilia, Alivernini Silvia, Andreoli Cristina, Aquilina Gabriele, Attias Leonello, Benfenati Emilio, Dusinska Maria, El Yamani Naouale, Louro Henriqueta, Marcon Francesca, Raitano Giuseppa, Rundén-Pran Elise, Russo Maria Teresa, Silva Maria Joao, Battistelli Chiara Laura
Journal
Environment International
Vol. 207
109948
Date of publication
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New Approach Methodologies (NAMs) are gaining significant momentum globally to reduce animal testing and enhance the efficiency and human relevance of chemical safety assessment. Even with substantial EU commitment from regulatory agencies and the academic community, the full regulatory adoption of NAMs remains a distant prospect. This challenge is further complicated by the fact that the academic world, oriented toward NAMs development, and regulatory agencies, focused on practical application, frequently operate in separate spheres. Addressing this disconnect, the present paper, developed within the European Partnership for the Assessment of Risks from Chemicals (PARC), provides a clear overview of both the available non-animal tests and current evaluation practices for genotoxic and carcinogenic hazard assessment, while simultaneously highlighting existing regulatory needs, gaps, and challenges toward greater human health protection and the replacement of animal testing through NAMs adoption.
The analysis reveals a complex landscape: while the EU is deeply committed to developing and adopting NAMs, as outlined in its Chemical Strategy for Sustainability and supported by initiatives like PARC, prescriptive regulations such as Classification, Labelling and Packaging (CLP) and Registration, Evaluation, Authorisation and Restriction of Chemicals (REACH) still heavily mandate in vivo animal data for hazard classification, particularly for germ cell mutagenicity and carcinogenicity. This reliance creates a “too-short-blanket-problem,” where efforts to reduce animal testing may impact human health protection because of the current in vivo-based classification criteria. In contrast, sectors such as cosmetics and certain European Food Safety Authority (EFSA)-regulated products demonstrate greater flexibility toward progressive integration of NAMs. While the deep mechanistic understanding of genotoxicity and carcinogenicity has significantly advanced the integration of alternatives to animal tests into regulatory chemical hazard assessment, their broader and full implementation faces considerable challenges due to both scientific complexities (i.e., the development and validation of fit-for-purpose NAMs) and existing legislative provisions.
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The European Commission’s safe and sustainable by design framework: bridging innovation and legislation
Authors
Schwirn Kathrin, Völker Doris, Løfstedt Magnus, Fantke Peter, Bossa Cecilia, Sharma Anežka, Posthuma Leo, Karakoltzidis Achilleas, Nikiforou Fotini, Mikołajczyk Alicja, Westra Jaco, Karakitsios Spyros, Sarigiannis Dimosthenis, Garmendia Aguirre Irantzu
Journal
Environmental Sciences Europe
Vol. 37
No. 1
189
Date of publication
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The European Commission’s Safe and Sustainable by Design (EC SSbD) Framework aims to put together safety and sustainability considerations throughout the entire chemical and material innovation processes. Being a voluntary (pre-market) approach, the framework fosters the development of safe and sustainable chemicals, materials, processes, and products while drawing on existing legal frameworks. We explore the relationship between the EC SSbD Framework and current European legislation regarding safety and sustainability. We highlight commonalities and differences to deduce synergies, and identify opportunities for mutual support and benefit. By systematically evaluating each step of assessing safety and sustainability criteria, indicators, and elements in the EC SSbD Framework, we demonstrate how information generated during the innovation process can also support legal compliance while driving pro-active design improvements. Vice versa, we investigate how regulatory data and methodologies can inform SSbD assessment steps, ensuring a reciprocal flow of information between innovation and compliance efforts. Despite notable differences identified, our findings demonstrate that the voluntary EC SSbD Framework has an added value, and it fosters synergies between innovation of chemicals and materials and safety and sustainability provisions of relevant legislation.

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Chemical mixture risk drivers and their heterogeneity in European freshwaters
Authors
Schor Jana, Schulze Tobias, Ulrich Nadin, Mutlu İlhan, Krauss Martin, Brack Werner, Doan Triet, Bingert Sven, Bumberger Jan, Busch Wibke, Hackermüller Jörg
Journal
Environment International
Vol. 205
109881
Keywords
Chemical pollution, Mixtures, Data re-use, Freshwater, Unintentional mixtures, Chemical risk assessment
Date of publication
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Chemical pollution of aquatic environments involves diverse substance combinations that can provoke combined biological and toxicological effects even when individual concentrations remain below effect thresholds. Multiple efforts are ongoing to better consider mixture effects in chemical safety regulation, but debate continues over whether a few substances drive aquatic mixture risks or whether a large heterogeneous set of drivers must be considered.
We employed a data re-use strategy to investigate the heterogeneity of chemical mixture risk drivers to aquatic species in Europe. Initially, we derived 201 risk-driving chemicals from a single measurement campaign, allowing driver comparisons between sites based on consistently measured substances.
We then extended our analysis to extensive chemical monitoring data of the NORMAN network, originating from different campaigns focusing on diverging substance sets measured at different times and locations. Data were aggregated quarterly and sites clustered per quarter according to measured substances. Using a robust definition of risk drivers (the most significant chemicals whose cumulative toxic units contribute  of total risk), our study concludes that at least 580 different substances drive chemical mixture risks in European freshwaters, with high heterogeneity between locations. Notably, mixture risk drivers were species-specific, exhibited temporal variability, and belonged to different chemical use groups considered in various safety regulations. We also found that monitoring data gaps prevented more precise analysis, particularly regarding temporal variability.
These findings have important implications for future chemical monitoring strategies and mixture risk regulation in Europe, highlighting the complexity and heterogeneity of chemical mixture risks in aquatic environments.
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Exploring the genotoxic potential of bisphenol A and its emerging alternatives in an advanced in vitro 3D zebrafish hepatic cell model
Journal
Science of the Total Environment
Vol. 1001
180527
Keywords
BPA, BPAF, BPAP, BPPH, Cytotoxicity, Genotoxicity, ZFL spheroids
Date of publication
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With global restrictions on Bisphenol A (BPA), various BPA alternatives are increasingly found in ecosystems, raising concerns. This study focuses on the genotoxic potential of three emerging BPA alternatives — Bisphenol AF (BPAF), Bisphenol AP (BPAP), and Bisphenol PH (BPPH) — using an advanced in vitro 3D model system, spheroids, prepared from a Zebrafish (Danio rerio) liver cell line (ZFL). Their cytotoxicity was evaluated using the CellTiter-Glo® 2.0 assay, while their genotoxic potential was assessed using the comet assay, γH2AX assay, and toxicogenomic analysis. The BPA alternatives were more cytotoxic to ZFL spheroids than BPA. Non-cytotoxic concentrations caused transient DNA damage without a significant increase in DNA double-strand breaks (DSBs). The toxicogenomic analysis confirmed these findings, indicating activation of the TP53 DNA damage response pathway, the nucleotide excision repair (NER) and base excision repair (BER) mechanisms, likely in response to bulky DNA lesions and oxidative DNA damage. In addition, the gene expression analysis indicated the influence of the tested BPs on the endocrine system. Our results indicate that BPAF, BPAP and BPPH have considerable genotoxic potential and pose a significant ecotoxicological risk, underscoring the need for further investigation and careful consideration of these chemicals as BPA replacements. 

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Identification of concepts of importance for the assessment of internal validity of in vitro toxicology studies using a modified Delphi technique
Authors
Mathisen Gro Haarklou, Svendsen Camilla, Vist Gunn E., Husøy Trine, Ames Heather, Bearth Angela, Audebert Marc, Bernhard Annette, Beronius Anna, Bruzell Ellen M., Di Consiglio Emma, Davenport Miles, Druwe Ingrid, Geci René, Gundert-Remy Ursula, Hartung Thomas, Hoffmann Sebastian, Hogberg Helena, Hooijmans Carlijn R, Lizarraga Lucina, Olker Jennifer, Prieto Pilar, Robinson Joshua, Rooney Andrew, Sebollela Adriano, Smith Nicola, Spilioti Eliana, Spyropoulou Anastasia, Tcheremenskaia Olga, Testai Emanuela, Wang Amy, Yost Erin, Zilliacus Johanna, Whaley Paul
Journal
Evidence-Based Toxicology
Vol. 3
No. 1
2551013
Keywords
Cell culture, NAMs, Generation risk assessment, Risk of bias
Date of publication
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Context

In vitro toxicity studies are increasingly being included as evidence in systematic reviews and chemical risk assessments. INVITES-IN, a tool for assessing the internal validity of in vitro studies, is under development in a process consisting of four consecutive studies. Study One in the creation of INVITES-IN was the development of an “item bank” database of 405 concepts (“items”) of potential relevance for assessing the internal validity of in vitro toxicity studies. The items were gathered from both focus group discussions and a purposive literature sample. In this paper we present the second study in the creation of INVITES-IN, i.e. the methods and results for identifying items for consideration when assessing the potential for bias in an in vitro study.

Method

A two-round digital Delphi survey, followed by online Delphi panel discussions guided by a moderator, was performed. The Delphi participants were experienced with both in vitro models and systematic review methods.

Results

Fifteen experts completed both Delphi rounds, and thirteen participated in a guided Delphi panel discussion. Of the 405 items in the bank, the experts agreed that 372 should be considered when assessing the potential for bias in an in vitro study. Items gathered from both the literature sample and the focus group discussions (Study One) were considered to be important for the assessment of the potential for bias in an in vitro study; 83–100% of the items collected from the literature sample were identified to be important and 91% (127) of the new items discovered in the focus group discussions of Study One were identified to be important.

Discussion

The 372 retained items will be interpreted into a manageable set of study appraisal criteria and a supporting guidance that will constitute the INVITES-IN study appraisal tool. In terms of lessons for tool development, the high retention of items included in tools designed for assessment of human and animal studies to in vitro studies suggests that many validity concepts are generally applicable across multiple study designs. Therefore, tool development processes should benefit from drawing on assessment tools outside the immediate domain of interest. Tool development would also likely benefit from supplementing literature reviews with focus group discussions, as our results demonstrate that the use of focus group discussions with domain experts was a pragmatic and valuable approach to increasing coverage of items in a tool development process.

Conclusion

In conclusion, this study demonstrates the value of using rigorous methods to ensure a comprehensive dataset as the starting point for creation of an assessment tool, though the direct application of Delphi methods to item banks may be an unnecessary step in tool development.

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Beyond estrogenicity: a comparative assessment of bisphenol A and its alternatives in in vitro assays questions safety of replacements
Authors
Srebny Vanessa, Henneberger Luise, König Maria, Huchthausen Julia, Braasch Jenny, Escher Beate Isabella
Journal
Environmental Science & Technology
Vol. 59
No. 33
17457−17470
Keywords
BPA, In vitro bioassay, New approach methodologies (NAM), Bisphenol alternatives, Metabolic activation
Date of publication
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Bisphenol A (BPA) is a well-known endocrine disruptor linked to numerous adverse health outcomes and was, therefore, banned in food-contact materials in the European Union. Numerous alternatives are now in commerce, but their health hazards are often inadequately addressed. This study compared BPA and 26 alternatives in six in vitro bioassays for cytotoxicity, endocrine disruption, xenobiotic metabolism, adaptive stress responses, mitochondrial toxicity, and neurotoxicity. We developed a cumulative specificity ratio score that integrates the degree of specific activation and overall toxicological activity across a test battery, enabling direct comparison of BPA with its alternatives. Several alternatives with close structural resemblance showed similar or stronger activation of the estrogen receptor α (ERα) than BPA. The lack of estrogenicity for several BPA alternatives, e.g., 4-(4-phenylmethoxyphenyl)sulfonylphenol (BPS-MPE), was accompanied by a shift toward peroxisome proliferator-activated receptor γ (PPARγ) activation, a receptor that is not relevant for BPA itself. Some alternatives additionally inhibited mitochondrial functions and caused neurotoxicity. Simulated phase I metabolism reduced the cytotoxicity of all alternatives except for methyl bis(4-hydroxyphenyl)acetate (Bz) and 4-[[4-(allyloxy)phenyl]sulfonyl]phenol (BPS-MAE), while estrogenic activity remained unchanged or decreased. This study demonstrates the utility of bioassays for rapid hazard assessment and comparative evaluation, suggesting that many BPA alternatives are regrettable substitutes, although 2,2,4,4-tetramethyl-1,3-cyclobutanediol (TMCD) is a potentially more benign alternative.

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MCDA applications in chemical alternatives assessment: a narrative review
Journal
Environment Systems & Decisions
Vol. 45
50
Keywords
Multicriteria decision analysis, Chemical alternatives assessment, Chemical hazard assessment, Chemical product development, Regrettable substitution
Date of publication
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This article reviews the application of multicriteria decision analysis (MCDA) in chemical alternatives assessment (CAA) and presents an overview of how the methodology has been applied within CAA. The study aimed to identify research that uses MCDA to identify the most harmful or least problematic chemicals and evaluate its current use in CAA. The study supports the Partnership for the Assessment of Risks from Chemicals (PARC) in developing a toolbox for safe and sustainable by design (SSbD). 520 studies were analysed, and 21 studies were included. Although MCDA in CAA is still emerging, it shows growth potential in decision analysis and chemical alternatives assessment. The reviewed studies cover various CAA applications and methodological approaches. Multiattribute utility theory (MAUT) is the most often used, followed by Technique for Order Preference by Similarity to Ideal Solution (TOPSIS), ÉLimination Et Choix Traduisant la REalité (ELECTRE), and analytic hierarchy process (AHP). Experimental data and in silico data have been used with roughly equal frequency as input data. Group decision-making involving stakeholders with conflicting interests is rarely addressed, with parameter weighting and problem structuring usually handled by authors, sometimes with expert input. Another little discussed topic is the use of external normalisation of input data. In silico generated predictions on chemical alternatives’ properties come with varying degrees of uncertainty, remaining an issue in CAA with MCDA.

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Disrupting defenses: effects of bisphenol A and its analogs on human antibody production in vitro
Authors
Passoni Francesca Carlotta, Iulini Martina, Galbiati Valentina, Marinovich Marina, Corsini Emanuela
Journal
Life
Vol. 15
No. 8
1203
Keywords
Bisphenols, Immunoglobulins, PBMCs, In vitro, New approach methodologies (NAMs)
Date of publication
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Bisphenol A (BPA) is an endocrine-disrupting chemical with estrogen-like activity, known to impair immune function. BPA may act as a pro-inflammatory agent, reducing immune response efficacy, increasing bacterial load in E. coli infections, and altering immune responses in parasitic infections (Leishmania major, Nippostrongylus brasiliensis, Toxocara canis) through cytokine and regulatory T-cell modulation. Following its ban in food contact materials in Europe, several analogs have been introduced. This study assessed the immunotoxicity of BPA and six analogs, namely BPAP, BPE, BPP, BPS-MAE, BPZ, and TCBPA, by evaluating in vitro the antibody production. Peripheral blood mononuclear cells from healthy male and female donors were exposed to increasing concentrations of each compound for 24 h. After stimulation with rhIL-2 and ODN2006, IgM and IgG secretion were measured on day six. All compounds suppressed antibody production in a concentration-dependent manner, with some sex-related differences. IC50 values showed BPP as the most potent suppressor, and BPE as the weakest. Similarly, IC20 values confirmed these differences in potency, except for BPA being the weakest for IgM in males. Overall, te results do not support the idea that BPA analogs are safer than BPA.

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Methodological approach for a simultaneous determination of persistent and non-persistent organic pollutants in human blood (serum/plasma) using gas chromatography and mass spectrometry techniques
Journal
Journal of Chromatography A
Vol. 1759
466235
Keywords
Persistent organic pollutants, Human serum/plasma, Human biomonitoring, Gas chromatography and mass spectrometry, Deca-BDE, Vinclozolin
Date of publication
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Human biomonitoring of persistent organic pollutants (POPs) remains essential for tracking long-term exposure, evaluating health risks, and assessing the effectiveness of regulatory bans. For this purpose, an experimental and analytical methodology has been optimized allowing the determination of 47 POPs, encompassing chlorinated cyclodienes, chlorobenzenes, cyclohexanes, polychlorodiphenyl derivatives, several congeners of polychlorobiphenyls (PCBs) and polybromodiphenyl ethers (PBDEs, including the deca-BDE), as well as three non-persistent chemicals (namely quintozene, tecnazene and vinclozolin). The method uses a single liquid-liquid extraction procedure with 500 µL of serum/plasma. Instrumental analysis involves gas chromatography (GC) with electron capture detection (ECD) for the analysis of organochlorines, and a subsequent injection into a GC coupled to mass spectrometry in negative chemical ionization mode (MS-NCI) for the determination of PBDEs. The analytical procedure has been successfully validated, demonstrating high sensitivity (limits of detection: 0.0016–0.012 ng/mL; limits of quantification: 0.0029–0.021 ng/mL), acceptable linearity (R² > 0.9962), good precision (coefficients of variation <25%, except for BDE-209), satisfactory accuracy (recoveries within 70–130% for 41 out of 47 compounds) and minimal matrix effects. Proficiency Testing Materials from the AMAP Ring Test for POPs in human serum confirmed the method’s reliability with results within the accepted reference range. This method represents an efficient and practical approach for human biomonitoring studies, with a simplified workflow suitable for routine application.

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Genetic and epigenetic biomarkers in human biomonitoring: why needed and how can Oxford Nanopore sequencing contribute?
Authors
Gand Mathieu, Soubry Adelheid, Mertens Birgit, Roosens Nancy H C J, De Keersmaecker Sigrid C.J.
Journal
Frontiers in Public Health
Vol. 13
1610248
Keywords
Susceptibility biomarker, Effect biomarker, SNP, Human biomonitoring, Oxford nanopore technologies, Large-population study
Date of publication
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Chemical risk assessment can benefit from integrating informative biomarkers in human biomonitoring (HBM). Beyond exposure biomarkers, effect biomarkers inform on biological reactions in the body, potentially leading to adverse effects, while susceptibility biomarkers address inter-individual variability in exposure. DNA methylation of key genes shows promise as an effect biomarker but this epigenetic mark remains underexplored in the context of chemicals. Similarly, although some genetic polymorphisms are linked to increased chemical susceptibility, genetic biomarkers are rarely included in HBM. This mini-review highlights recent literature supporting the inclusion of genetic and epigenetic biomarkers in HBM. Subsequently, we elaborate on how Oxford Nanopore Technologies as sequencing method can efficiently measure these biomarkers simultaneously, even in non-invasive samples like saliva. Widely used in other fields, this experimental set-up could facilitate the design of large-population studies paving the way for a next generation risk assessment (NGRA) of chemicals.

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Shinyscreen: mass spectrometry data inspection and quality checking utility
Authors
Kondić Todor, Elapavalore Anjana, Krier Jessy, Lai Shuen Lyn Adelene, Mohammed Taha Hiba, Narayanan Mira, Schymanski Emma
Journal
Journal of Cheminformatics
Vol. 17
98
Keywords
High Resolution Mass Spectrometry, Shiny, Spectral data analysis, Data processing, Visualisation, Metfrag, Compound identification, Non-targeted analysis, Docker
Date of publication
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Shinyscreen is an R package and Shiny-based web application designed for the exploration, visualization, and quality assessment of raw data from high resolution mass spectrometry instruments. Its versatile list-based approach supports the curation of data starting from either known or “suspected” compounds (compound list-based screening) or detected masses (mass list-based screening), making it adaptable to diverse analytical needs (target, suspect or non-target screening). Shinyscreen can be operated in multiple modes, including as an R package, an interactive command-line tool, a self-documented web GUI, or a network-deployable service. Shinyscreen has been applied in environmental research, database enrichment, and educational initiatives, showcasing its broad utility. Shinyscreen is available in GitLab (https://gitlab.com/uniluxembourg/lcsb/eci/shinyscreen) under the Apache License 2.0. The repository contains detailed instructions for deployment and use. Additionally, a pre-configured Docker image, designed for seamless installation and operation is available, with instructions also provided in the main repository.

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Interdisciplinary Assessment of Children's Lead Exposure in Residential Areas Degraded by Mining (Upper Meža Valley, Slovenia)
Authors
Bavec Špela, Čeru Teja, Kirinčič Stanislava, Ivartnik Matej, Golja Viviana, Turšič Janja, Teran Klemen, Miler Miloš
Journal
Exposure and Health
Vol. 17
1159–1177
Keywords
IEUBK model, Blood lead level, Soil, House dust, Dietary exposure, Risk assessment
Date of publication
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Children’s lead exposure in three mining-impacted residential areas (Črna, Mežica and Žerjav) was modelled using the Integrated Exposure Uptake Biokinetic Model for Lead in Children (IEUBK). Site-specific environmental and dietary Pb source values were determined for modelling. For the first time, dietary exposure from both market and local foods was studied in detail. Children (Group 1: 24–36 and Group 2: 36–48 months) geometric mean blood lead levels (BLLs) were predicted and lead uptake from multiple sources was quantified according to the different dietary exposure scenarios. Biomonitoring data were used for validation. Site-specific soil, house dust and local food Pb contents are higher than legislative and background levels, remaining a cause for concern. Drinking tap water concentrations and outdoor air contents were found in acceptable levels. The determined dietary exposures, ranging from 0.7 to 3.3 µg/kg bw/day, were above the benchmark dose level of 0.5 µg/kg bw/day for developmental neurotoxicity set for Pb in children, indicating a health concern. In general, the estimated BLLs matched reasonably well with the observed BLLs in the Črna and Mežica area for both age groups and in the Žerjav area for Group 2. For Group 1, in the Žerjav area, the output of the IEUBK model overestimated the actual BLLs of the children. For both groups, the primary exposure pathway in Žerjav is from soil/dust, ranging from 55.3 to 84.8%. In Črna and Mežica, soil/dust exposure ranged between 24.2 and 57.8% and between 26.4 and 61.7%, respectively, indicating that dietary exposure predominates when local foods are included. The results of our study also suggest that using the IEUBK default diet value would reduce the dietary exposure up to 25.2% in Črna, 24.2% in Mežica and 8.6% in Žerjav. One of the main findings is that a diet containing local foods can be an important source of lead in mining-contaminated areas.

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Unravelling immunomodulatory effects of bisphenol A substitutes on human macrophages, T and B lymphocytes using in vitro models
Authors
Franko Nina, Markovič Tijana, Žižek Pia, Kodila Anja, Mlinarič Raščan Irena, Sollner Dolenc Marija
Journal
Ecotoxicology and Environmental Safety
Vol. 300
118406
Keywords
Bisphenol A, BPA substitutes, Pergafast201, Immunotoxicity, Cytokine, Endocrine disruption, Immunomodulation, TLR4, MHC-I, NF-kB/AP-1
Date of publication
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This study investigates the immunomodulatory effects of BPA substitutes using in silico and in vitro approaches. A comprehensive in silico screening with Endocrine Disruptome of BPA and its 25 substitutes revealed that BPG, BPS-MAE, BPS-MPE, BPPH and PF201 have the highest potential to bind nuclear receptors. Based on the in silico ranking, 12 compounds were selected and tested in vitro to investigate their effects on THP-1 derived macrophages, Jurkat T cells and LCLs. The metabolic activity tests showed that BPA has IC50 values of 99-182 µM, while the values for BPG, BPPH and BPP are 5-10 times lower. Comparison of the IC50 values with the logP of the tested compounds showed that the BPA analogues affect cell viability in proportion to their lipophilicity (R2 = 0.9185). The results of the cytokine release assays showed that the BPA substitutes generally stimulated the proinflammatory response in THP-1 macrophages in a statistically significant manner when exposed to the environmentally relevant concentrations and suppressed it in the micromolar range in all cell lines tested. Further analysis using RamosBlue reporter cells indicated that BPAP, BPG, BPP and BPPH alter the NF-κB/AP-1 signalling pathway. Moreover, BPAP, BPG, BPP, BPPH, BPS-MAE, BPS-MPE, BTUM and PF201 were predicted in silico to be TLR4-MyD88 inhibitors. The overall results of this study identify BPG, BPP, BPPH, BPZ and TCBPA as BPA analogues with the highest immunomodulatory potential. In addition, the immunomodulatory potential of the BPA alternatives Pergafast201 and BTUM was confirmed in vitro for the first time. This study emphasises the need for cautious evaluation of BPA substitutes due to their potential immunomodulatory effect, which could significantly affect public health.

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A tiered next-generation risk assessment framework integrating toxicokinetics and NAM-based toxicodynamics: “proof of concept” case study using pyrethroids
Journal
Archives of Toxicology
Vol. 99
2759–2781
Keywords
Next-generation risk assessment (NGRA), New Alternative Methods (NAMs), ADME toxicokinetics, Toxicodynamics, Pyrethroids
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New Approach Methodologies (NAMs) in Next-Generation Risk Assessment (NGRA), integrating toxicokinetics (TK) with toxicodynamics (TD), provides an accurate evaluation of combined chemical exposures. This study assesses pyrethroids, which pose regulatory challenges due to their widespread use and cumulative exposure risks. A tiered NGRA framework was compared with conventional risk assessment (RA) to evaluate regulatory applicability. In Tier 1, ToxCast data established gene and tissue bioactivity indicators, facilitating hypothesis-driven hazard identification. Tier 2 examined combined risk assessments, rejecting the hypothesis of the same mode of action and highlighting inconsistencies in in vitro data and NOAEL/ADI correlations. Tier 3 applied Margin of Exposure (MoE) analysis and TK modeling to realistic exposure estimations for risk assessment screening based on internal doses, identifying tissue-specific pathways as critical risk drivers. Tier 4 refined bioactivity indicators using TK approaches to improve the NAM-based effect assessment, including an in vitro vs. in vivo comparison, with coherent results based on interstitial concentrations, though intracellular estimations remained uncertain. Tier 5 confirmed that dietary exposure in healthy adults is close to but below levels of concern, with bioactivity MoE values remaining below concern thresholds, and in vivo MoEs within the standard safety factors. Nevertheless, the MoEs are insufficient for addressing the additional non-dietary exposure expected from other pyrethroid uses such as biocides or pharmaceuticals. Results demonstrate that NGRA with TK-NAM-based TD offers a nuanced, regulatory-relevant framework for risk assessment. The proposed approach integrates the information on individual pyrethroids using bioactivity indicators; and the re-assessment of regulatory toxicity studies to select organ-relevant NOAELs allowed an improved in vitro-in vivo comparison, demonstrating the capacity of bioactivity-based MoEs for combined exposure assessments. This tiered approach provides key insights for regulatory decision-making, establishing a robust model for evaluating pyrethroids and similar chemical classes.

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In vitro to in vivo extrapolation modeling to facilitate the integration of transcriptomics data into genotoxicity assessment
Authors
Thienpont Anouck, Cho Eunnara, Williams Andrew, Meier Matthew J., Yauk Carole L., Beal Marc A., Van Goethem Freddy, Rogiers Vera, Vanhaecke Tamara, Mertens Birgit
Journal
Toxicology
Vol. 515
154165
Keywords
Transcriptomics, Genotoxicity, In vitro to in vivo extrapolation, New approach methodologies, Benchmark dose modeling, TempO-Seq®
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In vitro transcriptomics holds promise for high-throughput, human-relevant data but is not yet integrated into regulatory decision-making due to the lack of standardized approaches. For genotoxicity assessment, transcriptomic biomarkers such as GENOMARK and TGx-DDI facilitate qualitative and quantitative analysis of complex in vitro transcriptomic datasets. However, advancing their use in quantitative testing requires standardized methods for deriving transcriptomic Points of Departure (tPoDs) and linking them to in vivo responses. Herein, we investigated different approaches to calculate tPoDs and applied in vitro to in vivo extrapolation to obtain administered equivalent doses (AEDs). Human HepaRG cells were exposed for 72 h to 10 known in vivo genotoxicants (glycidol, methyl methanesulfonate, nitrosodimethylamine, 4-nitroquinoline-N-oxide, aflatoxin B1, colchicine, cyclophosphamide, mitomycin C, ethyl methanesulfonate, and N-Nitroso-N-ethylurea) from the highest concentration that induces up to 50 % cytotoxicity through a range of lower concentrations. Gene expression data was generated using a customized version of the TempO-Seq® human S1500 + gene panel. The GENOMARK and TGx-DDI biomarkers produced genotoxic calls for all of these reference genotoxicants. Next, we performed benchmark concentration (BMC) modeling to generate both genotoxicity-specific biomarker (tPoDbiomarkers) and generic tPoDs (tPoD S1500+). High-throughput toxicokinetic models estimated the human AEDs for these tPoDs, which were compared with (a) previously reported genotoxicity-specific AEDs from other New Approach Methodologies, and (b) in vivo PoDs from animal studies. We found that the generic AEDs were more conservative than genotoxicity-specific biomarker AEDs. For six of the nine genotoxicants, transcriptomic AEDs were lower than the in vivo PoDs; refined kinetic models may improve predictions. Overall, in vitro transcriptomic data in HepaRG cells provide protective estimates of in vivo genotoxic concentrations, consistent with other in vitro genotoxicity testing systems.

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Mapping chemicals across EU's legal frameworks towards a 'one substance, one assessment' approach
Authors
Andreassen Mathilda, Rudén Christina, Ågerstrand Marlene
Journal
Environmental International
Vol. 199
109460
Keywords
Chemical regulation, One substance one assessment, Regulatory risk assessment, Chemical identifiers
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Chemicals in the EU are mainly regulated based on their intended use. Each legal framework consists of requirements and guidance for hazard- and risk assessment, along with the associated decision processes e.g., registration or authorisation of chemicals for market access in the EU. As a single chemical may have multiple uses, it may be assessed under more than one framework, potentially leading to different assessment outcomes. To address this, the European Commission has introduced the ‘one substance, one assessment’ approach as part of the Chemicals Strategy for Sustainability. The aims of the approach include streamlining risk assessment processes and reducing duplication of work in assessing the same chemical. This study aimed to map the scope of chemicals subject to assessment in multiple legal frameworks and to illustrate the importance of coordination and communication in chemical assessment processes. This was achieved by identifying chemicals that are either registered or have received specific approval for the EU market, and analysing their presence in different legal frameworks. Our findings showed that almost one-tenth of the substances identified were listed under more than one framework. However, there was a notable lack of coherent chemical identifiers available to accurately identify chemicals across the frameworks. Additionally, we identified the presence of phthalates, bisphenols and PFAS in EU frameworks to illustrate how a group-based approach to chemical assessment could be applied across different legal frameworks.

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Spatio-temporal transcriptomic analysis reveals distinct nephrotoxicity, DNA damage, and regeneration response after cisplatin
Authors
Wijaya Lukas S., Kunnen Steven J., Trairatphisan Panuwat, Fisher Ciarán P., Crosby Meredith E., Schaefer Kai, Bodié Karen, Vaughan Erin E., Breidenbach Laura, Reich Thomas, Clausznitzer Diana, Bonnet Sylvestre, Zheng Sipeng, Pont Chantal, Stevens James L., Le Dévédec Sylvia E., van de Water Bob
Journal
Cell Biology and Toxicology
Vol. 41
49
Keywords
Nephrons, Cisplatin, Transcriptomics, Nephrotoxicity, Spatial, Temporal
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Nephrotoxicity caused by drug or chemical exposure involves complex mechanisms as well as a temporal integration of injury and repair responses in different nephron segments. Distinct cellular transcriptional programs regulate the time-dependent tissue injury and regeneration responses. Whole kidney transcriptome analysis cannot dissect the complex spatio-temporal injury and regeneration responses in the different nephron segments. Here, we used laser capture microdissection of formalin-fixed paraffin embedded sections followed by whole genome targeted RNA-sequencing-TempO-Seq and co-expression gene-network (module) analysis to determine the spatial–temporal responses in rat kidney glomeruli (GM), cortical proximal tubules (CPT) and outer-medulla proximal tubules (OMPT) comparison with whole kidney, after a single dose of the nephrotoxicant cisplatin. We demonstrate that cisplatin induced early onset of DNA damage in both CPT and OMPT, but not GM. Sustained DNA damage response was strongest in OMPT coinciding with OMPT specific inflammatory signaling, actin cytoskeletal remodeling and increased glycolytic metabolism with suppression of mitochondrial activity. Later responses reflected regeneration-related cell cycle pathway activation and ribosomal biogenesis in the injured OMPT regions. Activation of modules containing kidney injury biomarkers was strongest in OMPT, with OMPT Clu expression highly correlating with urinary clusterin biomarker measurements compared the correlation of Kim1. Our findings also showed that whole kidney responses were less sensitive than OMPT. In conclusion, our LCM-TempO-Seq method reveals a detailed spatial mechanistic understanding of renal injury/regeneration after nephrotoxicant exposure and identifies the most representative mechanism-based nephron segment specific renal injury biomarkers.

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Reusing chemical data across disciplines: initiatives and common challenges
Authors
Mustafa Fatima, Lynch Iseult, Theunis Jan, Elapavalore Anjana, Taha Hiba Mohammed, Frey Jeremy, Bach Felix, Bonatto Minella Christian, McEwen Leah
Journal
Chemistry International
Vol. 47
No. 2
12-16
Date of publication
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This work discusses reuse of chemical data across disciplines and the role of various data initiatives and projects including PARC, NORMAN-SLE, MassBank, WorldFAIR, PSDI and NFDI4Chem to facilitate increased data sharing. Improved machine-readable chemical data supports global research and interdisciplinary methodologies crucial for sustainable development and achievement of UNESCO’s Open Science priorities and the UN Sustainability Development Goals. Examples of success and ongoing approaches include integrating toxicology and chemical exposure data using ontologies, linking specialised chemical data collections with larger repositories such as PubChem, and developing IUPAC International Chemicals Identifier (InChI) extensions for nanomaterials and mixtures. National data infrastructure projects in the UK and Germany focus on digitising and standardising chemical research data management workflows, aiding scientists in data collection, storage, processing, analysis, disclosure, and reuse. These global initiatives aim to enhance chemical data interoperability to solve real-world problems, foster collaboration, and promote innovation while considering sustainable data resources beyond individual projects.

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Towards prospective identification of respiratory sensitizers
Journal
Archives of Toxicology
Keywords
Air–liquid interface, Calu-3 human bronchial epithelial cell line, IL-6, Epithelial barrier, AOP
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Exposure to respiratory sensitizers (RSs) is the leading cause of occupational asthma. Although the prospective identification of RSs is important, there currently exists no OECD-approved test guideline for this endpoint. The adverse outcome pathway for respiratory sensitization consists of key event (KE) 1: binding of the respiratory sensitizer to a protein, KE2: activation of lung epithelial cells, KE3: activation of dendritic cells, and KE4: T-cell response. Here, we focused on KE2 by investigating whether measuring this KE could contribute to prospectively identify respiratory sensitizers. To mimic real-life exposure, cells were exposed via the air. We used an air–liquid interface model comprising the human bronchial epithelial cell line Calu-3. Exposure to the RS piperazine (3, 18, and 100 mg/m3) dose-dependently increased IL-6 production at dose levels that did not affect the other parameters tested (barrier integrity, cell metabolism, cytotoxicity, and IL-8 production). IL-6 has been linked to asthma in humans. Exposure to the RS chloramine-T (30, 300, and 3000 ng/cm2) showed only minor effects on the parameters tested. Exposure to the RS 2,4-toluene diisocyanate (10, 33, and 100 mg/m3) at the highest dose level clearly affected all parameters tested. Disrupted barrier function has been linked to asthma. In conclusion, this study may possibly suggest that different respiratory sensitizers may differentially impact KE2. Further research is needed to elucidate this.

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Report of the European Commission workshop on "The roadmap towards phasing out animal testing for chemical safety assessments", Brussels, 11–12 December 2023
Authors
Cronin Mark T.D., Berggren Elisabet, Camorani Sofia, Desaintes Christian, Fabbri Marco, Fabrega Julia, Herzler Matthias, Ingram Jay D.E., Lacasse Katia, Louhimies Susanna, Maxwell Gavin, Schutte Katrin, Sobanski Tomasz, Streck Georg, Terron Andrea, Worth Andrew P.
Journal
Regulatory Toxicology and Pharmacology
Vol. 161
105818
Keywords
Roadmap, Alternatives to animal testing, Chemicals, Pharmaceuticals, Regulatory policy, European Commission, European Citizens' Initiative, Save cruelty-free cosmetics, Next generation risk assessment, Three Rs
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This report summarises the main findings and discussion from the European Commission (EC) workshop on “The Roadmap Towards Phasing Out Animal Testing for Chemical Safety Assessments” which was held in Brussels on 11–12 December 2023. The aim of the workshop was to gather ideas and opinions from individuals, organisations and institutions, and to discuss potential approaches for incorporating non-animal methods into chemical legislation with all interested stakeholders. The roadmap will be an EC policy document which will outline milestones and specific actions, addressing all relevant pieces of chemical legislation relating to safety assessment. It intends to describe the necessary steps to replace animal testing in pieces of legislation where it is currently required for chemical safety assessments. The roadmap will outline the path to expand and accelerate the development, validation and implementation of non-animal methods as well as means to facilitate their uptake across legislation. The workshop included presentations from a wide variety of stakeholders. The contributors provided examples of how non-animal methods could be applied to replace, reduce or refine animal testing in the assessment of human health and environmental effects. Furthermore, possible guiding principles for establishing a Next-Generation Risk Assessment (NGRA) in European chemicals legislation were also discussed. The workshop provided the basis for further discussion and for structuring the roadmap work.

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Hazard characterization of the mycotoxins enniatins and beauvericinto identify data gaps and improve risk assessment for human health
Authors
Behr Anne-Cathrin, Fæste Christiane Kruse, Azqueta Amaya, Tavares Ana M., Spyropoulou Anastasia, Solhaug Anita, Olsen Ann-Karin, Vettorazzi Ariane, Mertens Birgit, Zegura Bojana, Streel Camille, Ndiaye Dieynaba, Spilioti Eliana, Dubreil Estelle, Buratti Franca Maria, Crudo Francesco, Eriksen Gunnar Sundstøl, Snapkow Igor, Teixeira João Paulo, Rasinger Josef D., Sanders Julie, Machera Kyriaki, Ivanova Lada, Gaté Laurent, Le Hegarat Ludovic, Novak Matjaz, Smith Nicola M., Tait Sabrina, Fraga Sónia, Hager Sonja, Marko Doris, Braeuning Albert, Louro Henriqueta, Silva Maria João, Dirven Hubert, Dietrich Jessica
Journal
Archives of Toxicology
Vol. 99
1791–1841
Keywords
Enniatins, Beauvericin, Genotoxicity, Endocrine effects, Immunotoxicology, Toxicokinetics
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Enniatins (ENNs) and beauvericin (BEA) are cyclic hexadepsipeptide fungal metabolites which have demonstrated antibiotic, antimycotic, and insecticidal activities. The substantial toxic potentials of these mycotoxins are associated with their ionophoric molecular properties and relatively high lipophilicities. ENNs occur extensively in grain and grain-derived products and are considered a food safety issue by the European Food Safety Authority (EFSA). The tolerable daily intake and maximum levels for ENNs in humans and animals remain unestablished due to key toxicological and toxicokinetic data gaps, preventing full risk assessment. Aiming to find critical data gaps impeding hazard characterization and risk evaluation, this review presents a comprehensive summary of the existing information from in vitro and in vivo studies on toxicokinetic characteristics and cytotoxic, genotoxic, immunotoxic, endocrine, reproductive and developmental effects of the most prevalent ENN analogues (ENN A, A1, B, B1) and BEA. The missing information identified showed that additional studies on ENNs and BEA have to be performed before sufficient data for an in-depth hazard characterisation of these mycotoxins become available.

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EU roadmap for phasing out animal testing for chemical safety assessments: Recommendations from a multi-stakeholder roundtable
Authors
Walder Laurence, Pallocca Giorgia, Bastos Luísa F., Beekhuijzen Manon, Busquet Francois, Constantino Helder, Corvaro Marco, Courtot Lilas, Escher Beate, Fernandez Rebeca, Gougeon Emeline, Hansell Love, Herzler Matthias, Holden Laura, Hornek-Gausterer Romana, Irizar Amaia, Kandarova Helena, Kern Petra, Kolle Susanne, Lacasse Katia, Lee Isabelle, Macmillan Donna S., Maxwell Gavin, Moriarty Orla, Nadzialek Stephanie, Pochat Julia, Reid Kirsty, Revel Marion, Ritskes-Hoitinga Merel, Sobanski Tomasz, Stoddart Gilly, Underhill Dylan, Veillette Mandy, Vriend Jelle, Westmoreland Carl, Baines Julia
Journal
ALTEX – Alternatives to Animal Experimentation
Vol. 42
No. 3
435–450
Keywords
Non-animal methods, Regulatory framework, Transition to non-animal science, Change management, Validation
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As part of its response to the European Citizens’ Initiative “Save Cruelty-Free Cosmetics – Commit to a Europe Without Animal Testing”, the European Commission committed to developing a roadmap to eliminate the use of animals for the safety testing of chemicals. Five animal protection non-govern­mental organizations arranged a roundtable in June 2024 to support this effort, bringing together experts from different fields. The roundtable aimed to identify important elements and organizational structures for shaping the roadmap and explored practical steps to move to a regulatory system that does not rely on animal testing. Discussions covered revising current chemicals legislation, accel­erating the acceptance of non-animal methods, creating EU databases to improve data sharing, strengthening cooperation and communication, building skills and expertise in non-animal methods, monitoring progress, and increasing funding. This report summarizes the main ideas and recommendations from the roundtable to help guide the Commission’s work on the roadmap.

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Evaluating PFAS-Induced modulation of peripheral blood mononuclear cells (PBMCs) immune response to SARS-CoV-2 spike in COVID-19 Vaccinees
Authors
Ayuk Humblenoble Stembridge, Pierzchalski Arkadiusz, Tal Tamara, Myhre Oddvar, Lindeman Birgitte, Smith Nicola Margareta, Stojanovska Violeta, Zenclussen Ana Claudia
Journal
Environment International
Vol. 198
109409
Keywords
PFAS mixtures, PFAS exposure, Severe Acute Respiratory Coronavirus (SARS-CoV-2), Spike protein, Peripheral blood mononuclear cells (PBMCs), COVID-19 vaccination, COVID-19 infection, Proinflammatory chemokines
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The persistent nature of the environmental contaminants per- and polyfluoroalkyl substances (PFAS) has recently received considerable attention, particularly because of their adverse effects on immune system functionality in the context of vaccine responses to infectious diseases. Following COVID-19 vaccination, some studies have shown a significant negative correlation between serum PFAS concentrations and the humoral immune response to the SARS-CoV-2 spike protein vaccination. However, the influence of PFAS on the cell-mediated immune response to SARS-CoV-2 spike protein post-COVID-19 vaccination remains underexplored. In the present study, we investigated the impact of a human blood-relevant PFAS mixture, containing perfluorooctane sulfonate (PFOS), perfluorooctanoic acid (PFOA), perfluorohexane sulfonate (PFHxS), perfluorononanoic acid (PFNA), perfluorodecanoic acid (PFDA), and perfluoroundecanoic acid (PFUnDA) on innate (monocytes and NK cells), cell-mediated (T cells) and B cells adaptive immune responses in COVID-19-vaccinated female and male healthy donors. Human peripheral blood mononuclear cells (PBMCs) were exposed to a mixture of the six PFAS at real life concentrations and subsequently stimulated with the SARS-CoV-2 spike peptide. We report a significant upregulation of IFNγ production in T and NK cells, particularly among male donors exposed to high concentrations of the PFAS mixture. Conversely, we observed a decrease in the total B-cell population, particularly among female donors. A significant reduction in the secretion of the pro-inflammatory chemokines MIP-1α (CCL3) and MIP-3α (CCL20) was observed at high PFAS mixture concentrations. Overall, these findings suggest that high PFAS exposure may differentially affect immune responses in a sex-specific manner, with a potential impact on vaccine efficacy.

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Modeling zebrafish escape swim reveals maximum neuromuscular power output and efficient body movement adaptation to increased water viscosity
Authors
Ravel Guillaume, Mercé Théo, Bergmann Michel, Knoll-Gellida Anja, Bouharguane Afaf, Al Kassir Sara, Iollo Angelo, Babin Patrick J.
Journal
iScience
Vol. 28
No. 3
112056
Keywords
Kinematics, Neuroscience, Biophysics
Date of publication
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Under evolutionary pressure, the kinematic and energetic characteristics of animal locomotion have been optimized for survival. We investigated the kinematics and energetic performance of zebrafish eleutheroembryo escape swims triggered by electrical stimuli in fluids of increasing viscosity. Eleutheroembryos exhibited a decrease in both tail movement frequency and swimming velocity in more viscous environments, while the amplitude of body curvature remains constant. We then combined experimental imaging of freely swimming eleutheroembryos with Navier-Stokes numerical simulations. The results showed that the mechanical power output was initially maximal and remained essentially stable with increasing viscosity, while the cost of transport was linearly correlated with viscosity. Eleutheroembryos maximize neuromuscular power output during the fast-start escape response, enabling them to potentially escape predators under all circumstances in a natural environment. This model may be used to identify genetic and toxicological factors that reduce the mechanical power developed by the neuromuscular system or induce a loss of efficiency in its use.

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Motor and non-motor effects of acute MPTP in adult zebrafish: insights into Parkinson's disease
Authors
Tagkalidou Niki, Stevanović Marija, Romero Alfano Irene, Elizalde-Velazquez Gustavo Axel, Herrera-Vazquez Selene Elizabeth, Prats Eva, Gómez-Canela Cristian, Gómez-Oliván Leobardo Manuel, Raldúa Demetrio
Journal
International Journal of Molecular Sciences
Vol. 26
No. 4
1674
Keywords
MPTP, Adult zebrafish, Parkinson's disease, Prepulse inhibition, Psychosis, Turning difficulties, Hypokinesia
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Parkinson’s disease (PD), the second most common neurodegenerative disorder, is characterized by the progressive loss of dopaminergic neurons in the substantia nigra pars compacta, leading to motor and non-motor symptoms. The neurotoxin 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) has been extensively used in different animal species to develop chemical models of PD. This study aimed to evaluate the effects of acute exposure to MPTP (3 × 150 mg/kg, intraperitoneally) on adult zebrafish by assessing the neurochemical, transcriptional, and motor changes associated with PD pathogenesis. MPTP treatment resulted in a significant decrease in brain catecholamines, including dopamine, norepinephrine, and normetanephrine. Additionally, a trend towards decreased levels of dopamine precursors (tyrosine and L-DOPA) and degradation products (3-MT and DOPAC) was also observed, although these changes were not statistically significant. Gene expression analysis showed the downregulation of dbh, while the expression of other genes involved in catecholamine metabolism (th1, th2, mao, comtb) and transport (slc6a3 and slc18a2) remained unaltered, suggesting a lack of dopaminergic neuron degeneration. Behavioral assessments revealed that MPTP-exposed zebrafish exhibited reduced motor activity, consistent with the observed decrease in dopamine levels. In contrast, the kinematic parameters of sharp turning were unaffected. A significant impairment in the sensorimotor gating of the ASR was detected in the MPTP-treated fish, consistent with psychosis. Despite dopamine depletion and behavioral impairments, the absence of neurodegeneration and some hallmark PD motor symptoms suggests limitations in the validity of this model for fully recapitulating PD pathology. Further studies are needed to refine the use of MPTP in zebrafish PD models.

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MLinvitroTox reloaded for high‑throughput hazard‑based prioritization of high‑resolution mass spectrometry data
Authors
Hollender Juliane, Arturi Katarzyna, Harris Eliza J., Gasser Lilian, Escher Beate I., Braun Georg, Bosshard Robin
Journal
Journal of Cheminformatics
Vol. 17
No. 14
Keywords
ToxCast, Tox21, Toxicity, In vitro assay, Activity prediction, HRMS/MS, Binary classifcation, XGBoost, SIRIUS
Date of publication
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MLinvitroTox is an automated Python pipeline developed for high-throughput hazard-driven prioritization of toxicologically relevant signals detected in complex environmental samples through high-resolution tandem mass spectrometry (HRMS/MS). MLinvitroTox is a machine learning (ML) framework comprising 490 independent XGBoost classifiers trained on molecular fingerprints from chemical structures and target-specific endpoints from the ToxCast/ Tox21 invitroDBv4.1 database. For each analyzed HRMS feature, MLinvitroTox generates a 490-bit bioactivity fingerprint used as a basis for prioritization, focusing the time-consuming molecular identification efforts on features most likely to cause adverse effects. The practical advantages of MLinvitroTox are demonstrated for groundwater HRMS data. Among the 874 features for which molecular fingerprints were derived from spectra, including 630 nontargets, 185 spectral matches, and 59 targets, around 4% of the feature/endpoint relationship pairs were predicted to be active. Cross-checking the predictions for targets and spectral matches with invitroDB data confirmed the bioactivity of 120 active and 6791 nonactive pairs while mislabeling 88 active and 56 non-active relationships. By filtering according to bioactivity probability, endpoint scores, and similarity to the training data, the number of potentially toxic features was reduced by at least one order of magnitude. This refinement makes the analytical confirmation of the toxicologically most relevant features feasible, offering significant benefits for cost-efficient chemical risk assessment.

Scientific Contribution:
In contrast to the classical ML-based approaches for toxicity prediction, MLinvitroTox predicts bioactivity for HRMS features (i.e., distinct m/z signals) based on MS2 fragmentation spectra rather than the chemical structures from the identified features. While the original proof of concept study was accompanied by the release of a MLinvitroTox v1 KNIME workflow, in this study, we release a Python MLinvitroTox v2 package, which, in addition to automation, expands functionality to include predicting toxicity from structures, cleaning up and generating chemical fingerprints, customizing models, and retraining on custom data. Furthermore, as a result of improvements in bioactivity data processing, realized in the concurrently released pytcpl Python package for the custom processing of invitroDBv4.1 input data used for training MLinvitroTox, the current release introduces enhancements in model accuracy, coverage of biological mechanistic targets, and overall interpretability.

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The European Partnership PARC’s role in actively promoting the uptake of new approach methodologies and next-generation risk assessment into regulatory risk assessment practice
Journal
Current Opinion in Toxicology
Vol. 42
100517
Date of publication
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Existing approaches for human health risk assessment of chemicals have overall provided a high level of protection for EU citizens. However, the established assessment schemes face numerous challenges. Ethical and scientific concerns about using animals for safety testing have triggered awareness of the need for a paradigm shift, requiring new concepts for chemical risk assessment complementing and, in the long run, replacing existing schemes. Next-Generation Risk Assessment (NGRA) using new approach methodologies (NAMs) is commonly regarded as the way forward. However, adequately meeting regulatory needs is challenging. The European Partnership for the Assessment of Risks from Chemicals (PARC) supports the development of NGRA frameworks and their implementation at all levels, from developing adverse outcome pathways (AOPs), NAMs and integrated approaches to testing and assessments (IATAs), to designing new conceptual approaches and formulating strategic roadmaps. A particular strength of PARC is its focus on interaction and collaboration with stakeholders from all sectors of the chemical risk assessment community to promote cooperation, advance research, increase knowledge of chemical risk assessment and train methodological skills. Its results will help launch European and national strategies to reduce risks posed by hazardous chemicals, to reduce animal testing and to implement NGRA strategies in regulatory practice.

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Automated curation of spatial metadata in environmental monitoring data
Authors
Mutlu Ilhan, Hackermüller Jörg, Schor Jana
Journal
Ecological Informatics
Vol. 86
103038
Keywords
Environmental monitoring, Spatial data accuracy, Automated data curation, Big data analytics, AI applications in hydrology
Date of publication
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Spatial data accuracy in environmental monitoring is crucial for practical large-scale data analytics and the development of AI models. In this context, spatial data is metadata and faces the same challenges as any other metadata, like missing values, false or contradicting information, formatting problems of textual data and numbers, the usage of different languages, and more. These issues severely limit the usability of the data.
With this study, we provide an automatic approach, CleanGeoStreamR, to resolve as many of these issues as possible for the spatially annotated environmental monitoring database. We substantially increased the quality of the spatial metadata and, therefore, the quantity of data points that can be used in large-scale data analytics and AI applications.
Further, our goal is to raise awareness about the issues related to spatial metadata and promote the implementation of our concepts in other environmental monitoring data sources. Advanced understanding and the availability of automatic approaches like the presented method will substantially contribute to making environmental monitoring data FAIR and enhance its usability in the era of Big Data and AI.
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Metabolic and molecular characterization, following dietary exposure to DINCH, reveals new implications for its role as a metabolism-disrupting chemical
Authors
Krupka Sontje, Aldehoff Alix Sarah, Goerdeler Cornelius, Engelmann Beatrice, Rolle-Kampczyk Ulrike, Schubert Kristin, Klöting Nora, von Bergen Martin, Blüher Matthias
Journal
Environmental Research
Vol. 196
109306
Keywords
DINCH, MINCH, Metabolic disruption, Obesity, Adipose tissue
Date of publication
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Plastic materials are ubiquitous, leading to constant human exposure to plastic additives such as plasticizers. There is growing evidence that plasticizers may contribute to obesity due to their disruptive effects on metabolism. Alternatives like diisononylcyclohexane-1,2-dicarboxylate (DINCH) are replacing traditional phthalates such as di-(2-ethylhexyl) phthalate (DEHP), which are now banned due to their proven harmful health effects. While DINCH is considered a safer alternative to DEHP and no adipogenic effects have been demonstrated in in vivo studies, recent research suggests that the primary metabolite, monoisononylcyclohexane-1,2-dicarboxylic acid ester (MINCH), promotes adipocyte differentiation and dysfunction in vitro. However, metabolic and molecular effects are not fully understood in vivo.
Here, we performed a comprehensive in vivo analysis using C57BL/6N mice to investigate the effects of DINCH on adipose tissue physiology and function. Mice were exposed to two doses of DINCH for 16 weeks, followed by a 10-week recovery period. Tissue analysis confirmed the presence of DINCH and MINCH in liver and adipose tissue after treatment and recovery. After the recovery period, elevated DINCH concentrations in adipose tissue depots indicated possible bioaccumulation. Although no changes were observed in body composition and energy expenditure, sex-specific metabolic effects were identified. Female mice exhibited impaired whole-body insulin sensitivity and higher triglyceride levels, while male mice showed an altered insulin/C-peptide ratio and elevated cholesterol, HDL, and LDL levels. Proteomic profiling of serum, adipose and liver tissues revealed changes in pathways related to central energy metabolism and immune response, highlighting the systemic impact of DINCH, potentially on inflammatory processes. Most effects of DINCH, such as changes in insulin response and serum lipid levels, were diminished after the recovery period.
Despite many findings consistent with the existing literature suggesting DINCH as a safer DEHP substitute, the observed sex-specific effects on insulin sensitivity, lipid metabolism and inflammatory processes, as well as potential bioaccumulation and long-term metabolic effects of DINCH exposure warrant careful consideration in further risk assessment.
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Toward product safety and circularity: Understanding the information structure of global databases on chemicals in products and articles
Authors
Olisah Chijioke, Melymuk Lisa, Vestergren Robin, Rumar Karin, Wickman Tonie, Melander Nina, Talasniemi Petteri, Brandsma Sicco, af Gennäs Urban Boije, Scheringer Martin
Journal
Environmental Science & Technology
Vol. 59
No. 4
1897–1908
Keywords
Consumer products, REACH, Compliance, Regulations, Enforcement
Date of publication
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Access to information about chemicals in products and articles is critical for supporting enforcement of chemical regulations, assessing risks from chemicals, allowing informed consumer choices, and enabling product circularity. In this work, we identified and evaluated available databases (DBs) on chemicals in products and articles from the literature using a defined protocol and from European national market surveillance authorities, nongovernmental agencies, and industrial sector groups using questionnaires. This is the first comprehensive review of DBs that provide information about chemicals in products and articles. A majority of these DBs are heterogeneous in terms of scope, ontologies, and data structures. Among the 57 identified DBs, 49 identified specific substances and only 30 reported their concentration in their products. In addition, 35 DBs included hazard information and 27 DBs provided safety information about products or chemicals. The analysis highlights the lack of comprehensive or accessible data on chemicals in products and articles for most categories of products/articles and jurisdictions. The limitations of existing DBs were attributed to scattered regulatory information requirements, a lack of data for unregulated substances, the complexity of supply chain communication, and confidentiality issues. In response to these challenges, we identified opportunities for improving existing information transfer structures and exploring alternative data sources to promote product and article safety and circularity.

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PubChemLite plus collision cross section (CCS) values for enhanced interpretation of nontarget environmental data
Authors
Elapavalore Anjana, Ross Dylan, GROUÈS Valentin, Aurich Dagny, Krinsky Allison, Kim Sunghwan, Thiessen Paul, Zhang Jian, Dodds James, Baker Erin, Bolton Evan, Xu Libin, Schymanski Emma
Journal
Environmental Science & Technology Letters
Vol. 12
No. 2
166–174
Keywords
Nontarget screening, Identification, PubChemLite, Exposomics, Ion mobility, Collision cross section, PubChem
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Finding relevant chemicals in the vast (known) chemical space is a major challenge for environmental and exposomics studies leveraging nontarget high resolution mass spectrometry (NT-HRMS) methods. Chemical databases now contain hundreds of millions of chemicals, yet many are not relevant. This article details an extensive collaborative, open science effort to provide a dynamic collection of chemicals for environmental, metabolomics, and exposomics research, along with supporting information about their relevance to assist researchers in the interpretation of candidate hits. The PubChemLite for Exposomics collection is compiled from ten annotation categories within PubChem, enhanced with patent, literature and annotation counts, predicted partition coefficient (logP) values, as well as predicted collision cross section (CCS) values using CCSbase. Monthly versions are archived on Zenodo under a CC-BY license, supporting reproducible research, and a new interface has been developed, including historical trends of patent and literature data, for researchers to browse the collection. This article details how PubChemLite can support researchers in environmental and exposomics studies, describes efforts to increase the availability of experimental CCS values, and explores known limitations and potential for future developments. The data and code behind these efforts are openly available. PubChemLite can be browsed at https://pubchemlite.lcsb.uni.lu.

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Edit Publications AOP-networkFinder - A versatile and user-friendly tool for FAIR reconstruction of Adverse Outcome Pathway networks from the AOP-Wiki Add to Default shortcuts
Authors
Nurettin Yarar, Martens Marvin, Torbjørn Rognes, Jan Lavender, Hubert Dirven, Audouze Karine, Marcin W. Wojewodzic
Journal
Bioinformatics Advances
Vol. 5
No. 1
vbaf007
Date of publication
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The AOP-Wiki, a knowledge database for Adverse Outcome Pathways (AOPs), requires an efficient way to present an overview of its content for the reconstruction of networks by experts in a given domain. We have developed a user-friendly tool using artificial intelligence, the AOP-networkFinder, that retrieves AOPs of interest, modifies them in a desirable manner, and finally visualizes networks built around the retrieved AOPs. Our tool constructs AOP networks by connecting AOPs that use the same Key Events (KEs) in a versatile but controlled manner. Genes related to these KEs are also displayed. The constructed networks can then be exported as images or to Cytoscape for further fine-tuning and statistical analysis. The AOP-networkFinder allows users to comprehensively identify relationships between KEs and visualize the overall structure of an AOP both quickly and easily. This is immensely beneficial to researchers who need to understand the complex interplay between different KEs and the overall pathway they are studying and helps them to build further networks of interest while logging relevant information about changes within the network. These efforts are in line with the FAIR principles, which are crucial attributes for any developed databases and tools for optimizing use and reuse in a dynamically changing landscape of AOP-Wiki.

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Unveiling landscape-level drivers of freshwater biodiversity dynamics
Authors
Eastwood Niamh, Watson Arron, Zhou Jiarui, Orsini Luisa
Journal
Environmental DNA
Vol. 7
No. 1
e70058
Keywords
Biodiversity, Environmental DNA, Environmental pollutants, Lakes, Machine learning
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Human activities severely impact biodiversity, particularly in freshwater lakes. These habitats provide critical ecosystem services and, at the same time, suffer from river inflow, agricultural runoff, and urban discharge. DNA-based techniques are preferred for monitoring biodiversity due to their effectiveness. However, pinpointing the causes of biodiversity decline across landscapes poses challenges due to the complex interactions between biodiversity and environmental drivers. In this study, we used an explainable multimodal machine learning approach that can integrate different types of data, such as biological, chemical, and physical data, to discover potential causes of biodiversity dynamics. This is done by identifying relationships between environmental drivers—plant protection products, physico-chemical parameters and typology- and community biodiversity changes in 52 lake ecosystems. By analyzing benthic and pelagic lake communities, we found significant correlations between biodiversity and environmental drivers, such as plant protection products. Furthermore, our analysis allowed us to identify factors within these drivers responsible for biodiversity dynamics. Specifically, insecticides and fungicides were identified as the most important factors, followed by 43 physico-chemical factors, including many heavy metals. Our holistic, data-driven approach provides insights into large-scale biodiversity changes and could inform conservation efforts and regulatory interventions to protect biodiversity from pollution.

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Daphnids can safeguard the use of alternative bioassays to the acute fish toxicity test: A focus on neurotoxicity
Authors
Schür Christoph, Paparella Martin, Faßbender Christopher, Stoddart Gilly, Jesi Marco Baity, Schirmer Kristin
Journal
Environmental Toxicology and Chemistry
Vol. 1
No. 13
Keywords
Aquatic toxicology, Variability, Alternative methods, Integrated approaches to testing and assessment
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Assessment of potential impacts of chemicals on the environment traditionally involves regulatory standard data requirements for acute aquatic toxicity testing using algae, daphnids, and fish (e.g., Organisation for Economic Co-operation and Development [OECD] test guidelines 201, 202, and 203, respectively), representing different trophic levels. In line with the societal goal to replace or reduce vertebrate animal testing, alternative bioassays were developed to replace testing with fish: the fish cell line RTgill-W1 acute toxicity assay (OECD test guideline 249) and the zebrafish embryo acute toxicity test (zFET, OECD test guideline 236). However, previous studies revealed the lower sensitivity of the RTgill-W1 cell line assay and zFET for some neurotoxic chemicals and allyl alcohol, which is presumably biotransformed in fish to the more toxic acrolein (which is predicted well through the cell line assay). To provide an additional alternative to acute fish toxicity, in this study we analyzed historic ecotoxicity data for fish and daphnids from the EnviroTox Database. We found a considerable variability in acute fish median lethal concentration and acute daphnids median effect concentration values, particularly for neurotoxic chemicals. Comparing sensitivity of these taxonomic groups according to different neurotoxicity classification schemes indicates that fish rarely represent the most sensitive trophic level of the two. Exceptions here most prominently include a few cyclodiene compounds, which are no longer marketed, and a chemical group that could be identified through structural alerts. Moreover, daphnids are more sensitive than fish to acrolein. This analysis highlights the potential of the Daphnia acute toxicity test, which is usually a standard regulatory data requirement, in safeguarding the environmental protection level provided by the RTgill-W1 cell line assay and the zFET. This research, rooted in decades of efforts to replace the fish acute toxicity test, shifts the focus from predicting fish toxicity one-to-one to emphasizing the protectiveness of alternative methods, paving the way for further eliminating vertebrate tests in environmental toxicology.

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Edit Publications Endocrine disrupting toxicity of bisphenol A and its analogs: implications in the neuro-immune milieu Add to Default shortcuts
Authors
Buoso Erica, Masi Mirco, Limosani Roberta Valeria, Oliviero Chiara, Saeed Sabrina, Iulini Martina, Passoni Francesca Carlotta, Racchi Marco, Corsini Emanuela
Journal
Journal of Xenobiotics
Vol. 15
No. 1
13
Keywords
EDC, RACK1, In vitro screening tool, Immune system, INEN, System toxicology, HPA axis, Glucocorticoids, BDNF, Neurodegeneration
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Endocrine-disrupting chemicals (EDCs) are natural or synthetic substances that are able to interfere with hormonal systems and alter their physiological signaling. EDCs have been recognized as a public health issue due to their widespread use, environmental persistence and the potential levels of long-term exposure with implications in multiple pathological conditions. Their reported adverse effects pose critical concerns about their use, warranting their strict regulation. This is the case of bisphenol A (BPA), a well-known EDC whose tolerable daily intake (TDI) was re-evaluated in 2023 by the European Food Safety Authority (EFSA), and the immune system has been identified as the most sensitive to BPA exposure. Increasing scientific evidence indicates that EDCs can interfere with several hormone receptors, pathways and interacting proteins, resulting in a complex, cell context-dependent response that may differ among tissues. In this regard, the neuronal and immune systems are important targets of hormonal signaling and are now emerging as critical players in endocrine disruption. Here, we use BPA and its analogs as proof-of-concept EDCs to address their detrimental effects on the immune and nervous systems and to highlight complex interrelationships within the immune–neuroendocrine network (INEN). Finally, we propose that Receptor for Activated C Kinase 1 (RACK1), an important target for EDCs and a valuable screening tool, could serve as a central hub in our toxicology model to explain bisphenol-mediated adverse effects on the INEN.

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New approach methodologies in human health risk assessment across European regulatory frameworks: Status quo, barriers and drivers for regulatory acceptance and use
Authors
Bearth Angela, Roth Nicolas, Jansen Tom, Holden Laura, Cavoski Aleksandra, Di Consiglio Emma, Hauzenberger Ingrid, Lee Robert, Mombelli Enrico, Tcheremenskaia Olga, Wendt-Rasch Lina, Wilks Martin
Journal
Environment International
Vol. 196
No. February 2025
109279
Keywords
Next generation risk assessment, New approach methodologies, Chemical regulation, Barriers, Drivers, Perspectives, Social science, Survey
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The traditional approaches to chemical risk assessment for human health are continuously challenged by their limitations, such as validity concerns, societal pressure to use animal-free methods, and resource constraints. New Approach Methodologies (NAMs) are considered a promising avenue toward modernisation of chemical risk assessment practices but their implementation in practice has been slow. This article aims to investigate the perspectives of human health risk assessors on the status quo, barriers and drivers of the acceptance and use of NAMs across different regulatory frameworks. A mixed method design was applied: qualitative interviews (N = 19) and an online survey with human health risk assessors from industry, regulatory agencies/institutions and academia (N = 222). The results show heterogeneity in familiarity and use of specific NAMs (e.g., QSARs as well-known and used vs. −omics approaches that are seldom used), the risk assessors’ background (e.g., industry vs. regulatory agencies and institutions vs. academia) and the application context (e.g., screening/prioritisation vs. hazard identification/characterisation). The identified barriers and drivers offer pointers for the future integration and acceptance of NAMs in regulatory risk assessment. For instance, guidance documents can facilitate the use of NAMs, showcasing successful examples that increase trust in the methods and thus, the risk assessors’ confidence in using these methods. Among other things, the article highlights the importance of considering human health risk assessors’ needs and prerequisites to foster bottom-up coordinated efforts and to ensure the success of top-down legal and institutional change to incorporate NAMs in regulatory risk assessment.
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Collecting perspectives on project prioritisation process in the EU co-funded multinational partnership for the assessment of risks from chemicals (PARC) through focus group discussion
Authors
Permana Katya Manuella, Tannous Maria, Mouaziz Hanna, Sanders Pascal, Bonvallot Nathalie, Rousselle Christophe
Journal
Environmental Sciences Europe
Vol. 37
2
Keywords
PARC, Chemical risk assessment, Research and innovation need prioritisation, EU partnership coordination, Focus group discussion, Regulatory relevance
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Introduction
The European Partnership for the Assessment of Risks from Chemicals (PARC) is a 7-year multinational partnership aimed at consolidating and strengthening European Union’s (EU) research and innovation capacity for chemical risk assessment (RA) to protect human health and the environment. It consists of nine work packages (WP) involving more than 200 participating organisations from 29 countries. PARC is currently mapping the most relevant needs in the field of European chemical RA to steer PARC’s future activities in the coming years. The present study aims to gather the perspectives of WP/Task/Project Leaders of PARC to understand their experience during the first prioritisation round of PARC activities and to identify potential points of improvement for future rounds.

Methods
Three online 90-min focus group discussion (FGD) sessions were conducted between the 3rd and 9th of May 2023. Each session was attended by 4-5 participants with at least one representative from each PARC WPs 4, 5 and 6 (n =&thinsp;13). The sessions were recorded and transcribed, then analysed in NVivo 12 software using thematic analysis.

Results
Some important aspects for the prioritisation of activities that were mentioned include: (1) having a transparent prioritisation process even though each WP might need different prioritisation criteria, (2) balancing the fulfilment of short-term regulatory needs and anticipating long-term needs in chemical RA, (3) maintaining alignment and synergy between the WPs and with other relevant EU initiatives to avoid duplication and to ensure continuity of work and (4) making sure that PARC can effectively respond to requests from different PARC stakeholders.

Conclusions
The next round of PARC research activity steering process will provide an opportunity to implement the various improvements identified. PARC should utilise the advantage of having stakeholders from different backgrounds (e.g., risk assessors, policymakers, regulatory bodies, academia, etc.) within its consortium and its advising bodies to prioritise projects and activities that will support its overall objectives. These recommendations could also be of interest outside PARC in the context of prioritising research and innovation needs related to chemical RA.

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Zebra_K, a kinematic analysis automated platform for assessing sensitivity, habituation and prepulse inhibition of the acoustic startle response in adult zebrafish
Authors
Stevanović Marija, Tagkalidou Niki, Multisanti Cristiana Roberta, Pujol Sergi, Aljabasini Ouwais, Prats Eva, Faggio Caterina, Porta Josep M, Barata Carlos, Raldua Demetrio
Journal
Science of The Total Environment
Vol. 958
No. January 2025
178028
Keywords
Acoustic startle response, Neuroplasticity, Habituation, Prepulse inhibition, Sensorimotor gating, Adult zebrafish, Kinematic analysis platform
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The acoustic startle response (ASR) is leaded by a sudden and intense acoustic stimulus. ASR has several forms of plasticity, including habituation and sensorimotor gating. Although ASR and its plasticity have been intensively studied in zebrafish (Danio rerio) larvae, information in adult zebrafish is still very scarce. In this manuscript we present Zebra_K, a new automated high-content kinematic analysis platform for assessing ASR, its habituation and prepulse inhibition (PPI), a quantitative measure of sensorimotor gating, in adult zebrafish. The analysis of the kinematic parameters of ASR in adult zebrafish has shown a single response wave consistent with the short-latency C-bend described in zebrafish larvae. Moreover, protocols have been designed and validated in Zebra_K for the analysis of sensitivity, habituation and PPI of this response. Then, the effect of the time of day and the gender on zebrafish ASR plasticity has been analyzed for the first time. Females exhibited higher responsiveness and a lower habituation and PPI than males, a result consistent with the gender effect described in other animal models and in humans. This platform has also been used to determine the effect of a pharmacological modulators of ASR plasticity, the NMDA-receptor antagonist ketamine. As described in other animal models, ketamine increased the responsiveness to the acoustic stimuli, decreasing habituation and leading to complete abolition of PPI. These results enhance the interest of using adult zebrafish to assess the potential effect of environmental pollutants on ASR plasticity.

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A cognitive and sensory approach based on workshops using the zebrafish model promotes the discovery of life sciences in the classroom
Journal
Biology Methods and Protocols
Vol. 9
No. 1
bpae092
Keywords
Cognitive and sensory approach, Biology education, Teacher-researcher partnership, Zebrafish
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The main objective of the ZebraCool programme was to create a positive attitude and curiosity towards science by bringing experimental activities within schools using an introductory cognitive and sensory approach. This innovative programme was offered at all levels of primary and secondary education including vocational high schools. Thematic workshops can be carried out on various themes such as comparative anatomy and embryology, molecular biology and evolution, or toxicology and endocrine disruptors. They were on an ad hoc basis or as part of an annual school project using zebrafish as a model. This animal was a very attractive entry point for the educator to motivate students to appreciate biology, in particular in the field of molecular biology and evolution. For each practical workshop, the student was an actor in his/her learning, which was intended to arouse the curiosity and desire to understand and learn. The programme was based on close collaboration between class teachers and programme educators to adapt workshops’ content to the school curriculum. Students conducted their own experiments, formulated and tested hypotheses, learned laboratory techniques, collected and analysed data. ZebraCool scientific activities fell within a conceptual framework of evolutionary biology through which participants perceived their own inner fish through the comparison of biological processes between humans and zebrafish.

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Association of environmental pollutants with asthma and allergy, and the mediating role of oxidative stress and immune markers in adolescents
Authors
Hassen Y. Hamid, Govarts Eva, Remy Sylvie, Cox Bianca, Iszatt Nina, Portengen Lützen, Covaci Adrian, Schoeters Greet, Den Hond Elly, De Henauw Stefaan, Bruckers Liesbeth, Koppen Gudrun, Verheyen Veerle J.
Journal
Environmental Research
Vol. 265
120445
Keywords
Asthma, Allergy, Airway inflammation, Oxidative stress, Immune biomarkers, Human biomonitoring, Mixture, Adolescents
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Background
Asthma and allergic diseases are among the common causes of morbidity and mortality globally. Various environmental pollutants are linked to the development of asthma and allergic diseases. Evidence on the role of oxidative stress and immune markers in the association of environmental pollutants with asthma and allergy is scant. We examined cross-sectional associations between environmental pollutants and asthma and allergy, investigated mixture effects and possible mediation by oxidative stress or immune markers.

Methods
We used data from the Flemish Environment and Health Study 2016–2020 (FLEHS IV), including 409 adolescents aged 13–16 years. Fifty-four pollutants, including metals, phthalates, Di(isononyl) cyclohexane-1,2-dicarboxylate (DINCH), bisphenols, currently used and legacy pesticides, flame retardants, per- and polyfluoroalkyl substances (PFAS), polyaromatic hydrocarbons (PAHs), and polychlorinated biphenyls (PCBs) were analyzed. Outcomes were self-reported asthma, rhinitis, eczema, allergies, respiratory infection, and airway inflammation, measured through fractional exhaled nitric oxide (FeNO). Single pollutant models using multiple regression analysis and multipollutant models using Bayesian Kernel Machine Regression (BKMR) were fitted. As sensitivity analysis, Bayesian model averaging (BMA) and elastic net (ENET) models were also performed. For Bayesian models, posterior inclusion probabilities (PIP) were used to identify the most important chemicals. Mediation analysis was performed to investigate the role of oxidative stress, measured by urinary 8-hydroxy-2' -deoxyguanosine (8-OHdG), and immune markers (eosinophils, basophils, InterLeukin 8, InterLeukin 6, and Interferon-ᵧ in blood).

Results
In single pollutant models, FeNO was significantly higher by 20% (95% CI: 6, 36%) and 13% (95% CI: 2, 25%) per interquartile range (IQR) fold in mono-n-butyl phthalate (MnBP) and mono-benzyl phthalate (MBzP), respectively. In BKMR analysis, the group PIPs indicated phthalates and DINCH as the most important group (group PIP = 0.509), with MnBP being the most important pollutant within that group (conditional PIP = 0.564; %change = 28%; 95%CI: 6, 54%). Similar patterns were observed in all multipollutant models. Eosinophil count mediated 37.8% (p = 0.018) and 27.9% (p = 0.045) of the association between MBzP and FeNO, and the association between MnBP and FeNO, respectively. 8-OHdG plays a significant mediating role in the association of 2,4-Dichlorophenoxyacetic acid (2,4-D) (55.4%), 3,5,6-Trichloro-2-pyridinol (TCPY) (48.1%), and 1-Naphthylamine (1-NAP) (32.7%) with rhinitis, while the total effects of these chemicals on rhinitis were not statistically significant.

Conclusions
This study found associations between phthalates, MnBP and MBzP, and elevated FeNO, which appeared to be mediated by eosinophil count. 8-OHdG plays a significant mediating role in the association between 2,4-D, TCPY, and 1-NAP with rhinitis, while their direct effects remain non-significant. Use of inflammatory and oxidative stress markers can enhance the understanding of inflammatory processes in asthma and allergic diseases due to environmental pollutants.

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A comprehensive library of lifetime physiological equations for PBK models
Authors
Gastellu Thomas, Karakoltzidis Achilleas, Ratier Aude, Bellouard Marie, Alavarez jean claude, Rivière Gilles, Le Bizec Bruno, Karakitsios Spyros, Sarigiannis Dimosthenis, Vogs Carolina
Journal
Environmental Research
Vol. 265
120393
Keywords
ADME toxicokinetics, Lifetime dietary exposure, Total mercury, Toxicological reference values
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Dietary risk assessment of food contaminants requires a well-established understanding of the exposure in a heterogeneous population. There are many methods for estimating human exposure to food contaminants, such as intake calculations and internal biomarkers of exposure measured in individuals. However, those methods are expensive, partly invasive, and often provide a momentary exposure snapshot. Physiologically Based Kinetic (PBK) modelling is increasingly used to overcome those challenges that traditional human exposure methods encounter. Still, PBK models are often restricted to certain life stages (e.g., children, adolescents, adults). This study outlines a strategy for implementing nonlinear organ growths in age-specific PBK models to enhance dietary risk assessment from lifetime exposure. To this end, lifetime physiological equations calculating organ growth for both sexes were inventoried from literature and a library was established for 24 organs. We then assessed total lifelong mercury exposure via foodstuff by combining two existing age-specific PBK models for methylmercury (MeHg) and inorganic mercury (iHg) that simulated internal exposure to total mercury, the speciation typically measured in hair and urine. We implemented a set of physiological equations in the PBK model that fitted best the total mercury measured in individuals' organs, hair, and urine from heterogeneous populations. For refined dietary risk assessment, we ultimately estimated total mercury concentration in hair and urine based on i) maximum limits defined by the regulation for MeHg in seafood, ii) the health-based guidance values for MeHg and iHg, and iii) realistic intakes considering French demographic parameters and food consumption data. These exposure scenarios demonstrated that total mercury concentrations in hair and urine estimated from realistic intakes are below critical effect level measures at all ages. The result of this study is the creation of easily accessible tools in Excel and R that facilitate the implementation of physiological equations in Next Generation PBK models.

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Developing quantitative Adverse Outcome Pathways: An ordinary differential equation-based computational framework
Journal
Computational Toxicology
Vol. 32
100330
Keywords
Ordinary differential equations (ODEs), Quantitative Adverse Outcome Pathway (qAOP), Key event relationships (KERs), Adverse outcome (AO), Response–response modeling, Predictive toxicology, Markov chain Monte Carlo (MCMC), Population variability
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The Adverse Outcome Pathway (AOP) biological framework was introduced in 2012, yet defining a mathematical/computational framework for quantitative AOP (qAOP) development remains an open problem. In order to properly unravel the intricate biological mechanisms described by AOPs and provide quantitative predictions to support risk assessment, a computational model should provide a clear time-course prediction of key events (KEs), as well as describe the key event relationships (KERs) linking a molecular initiating event (MIE) to an adverse outcome (AO). Ultimately, the mathematical description of those links entails the possibility of quantitatively predicting adverse effects based on early events.
 
Here, we propose an ordinary differential equation (ODE) - based qAOP framework, as ODEs provide a time-course description of KEs and KERs. We illustrate how the application of computational techniques, such as Bayesian inference and Leave-one-out cross-validation (LOO-CV), can assist AOP development, introducing concepts of qAOP model selection and qAOP updating. Furthermore, we compare ODE and response–response based qAOP models, showing that ODE-based qAOPs can avoid erroneous predictions potentially resulting from response–response qAOPs. Finally, we show how ODE parameter variability can be linked to AO variability across a population. Overall, this framework serves as a valuable mathematical and computational tool for the development of qAOP models, enhancing our comprehension of intricate biological pathways associated with adverse outcomes.
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A comprehensive item bank of internal validity issues of relevance to in vitro toxicology studies
Authors
Vist Gunn E., Ames Heather M., Mathisen Gro H., Husøy Trine, Svendsen Camilla, Beronius Anna, Di Consiglio Emma, Druwe Ingrid, Hartung Thomas, Hoffmann Sebastian, Hooijmans Carlijn R., Machera Kyriaki, Prieto Pilar, Robinson Joshua F., Roggen Erwin, Rooney Andrew A., Roth Nicolas, Spilioti Eliana, Spyropoulou Anastasia, Tcheremenskaia Olga, Testai Emanuela, Vinken Mathieu, Whaley Paul
Journal
Evidence-Based Toxicology
Vol. 2
No. 1
2418045
Keywords
In vitro methods, Toxicology, NAMs, Risk of bias, Internal validity
Date of publication
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Context: In vitro toxicology studies are increasingly being included as evidence in systematic reviews and chemical risk assessments. INVITES-IN, a tool for assessing the internal validity of in vitro studies, is currently under development. The first step in developing INVITES-IN involves the creation of an “item bank”, an overview of study assessment concepts that may be relevant to evaluating the internal validity of in vitro toxicology studies. The item bank and methodology for its creation presented in this manuscript are intended to be a general resource for supporting the development of appraisal tools for in vitro toxicology studies and potentially other study designs.

Methods: We derived the item bank from seven literature sources (one existing item bank created from a systematic review of assessment criteria for in vitro studies, and six purposively sampled study appraisal tools) and the transcripts of three focus groups. Assessment criteria plausibly relating to internal validity were abstracted from the literature sources and focus group transcripts, disaggregated into individual criteria, then normalised to express in the simplest achievable language the core issue in each criterion – an “item bank” of assessment concepts. The items were then mapped onto a set of bias domains. We conducted simple descriptive statistical analyses and visualisations to describe patterns in the dataset and developed recommendations for the use and development of the item bank.

Results: The item bank contains 405 items of potential relevance to evaluating the internal validity of in vitro toxicology studies.

Discussion: To our knowledge, this is the second item bank of any kind to have been created for toxicology studies, and the first to use focus groups as a data source alongside literature analysis. The large number of items contributed by focus group discussions suggests this is an efficient method for capturing internal validity issues that are not easily identifiable in the literature. We believe our item bank and methodology for its creation will be a useful resource for supporting the development of appraisal tools. Due to the broad applicability of many items in the item bank, it may be informative for study designs beyond the in vitro domain.

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A preliminary estimate of the environmental burden of disease associated with exposure to pyrethroid insecticides and ADHD in Europe based on human biomonitoring
Authors
Purece Anthony, Thomsen Sofie Theresa, Plass Dietrich, Spyropoulou Anastasia, Machera Kyriaki, Palmont Philippe, Crépet Amélie, Benchrih Rafiqa, Devleesschauwer Brecht, Wieland Nina, Scheepers Paul, Deepika Deepika, Kumar Vikas, Sanchez Gerardo, Bessems Jos, Piselli Dario, Buekers Jurgen
Journal
Environmental Health
Vol. 23
91
Date of publication
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Human biomonitoring (HBM) data indicate that exposure to pyrethroids is widespread in Europe, with significantly higher exposure observed in children compared to adults. Epidemiological, toxicological, and mechanistic studies raise concerns for potential human health effects, particularly, behavioral effects such as attention deficit
hyperactivity disorder (ADHD) in children at low levels of exposure. Based on an exposure-response function from a single European study and on available quality-assured and harmonized HBM data collected in France, Germany, Iceland, Switzerland, and Israel, a preliminary estimate of the environmental burden of disease for ADHD associated with pyrethroid exposure was made for individuals aged 0–19 years. The estimated annual number of prevalencebased disability-adjusted life years (DALYs) per million inhabitants were 27 DALYs for Israel, 21 DALYs for France, 12 DALYs for both Switzerland and Iceland, and 3 DALYs for Germany; while the annual ADHD cases per million inhabitants attributable to pyrethroids were 2189 for Israel, 1710 for France, 969 for Iceland, 944 for Switzerland, and 209 for Germany. Direct health costs related to ADHD ranged between 0.3 and 2.5 million EUR yearly per million inhabitants for the five countries. Additionally, a substantial number of ADHD cases, on average 18%, were
associated with pyrethroid exposure. Yet, these figures should be interpreted with caution given the uncertainty of the estimation. A sensitivity analysis showed that by applying a different exposure-response function from outside the EU, the population attributable fraction decreased from an average of 18 to 7%. To ensure more robust disease burden estimates and adequate follow-up of policy measures, more HBM studies are needed, along with increased efforts to harmonize the design of epidemiological studies upfront to guarantee meta-analysis of exposureresponse functions. This is particularly important for pyrethroids as evidence of potential adverse health effects is continuously emerging.

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Evaluating the performance of multi-omics integration - a thyroid toxicity case study
Authors
Canzler Sebastian, Schubert Kristin, Rolle-Kampczyk Ulrike E., Wang Zhipeng, Schreiber Stephan, Seitz Hervé, Mockly Sophie, Kamp Hennicke, Haake Volker, Huisinga Maike, von Bergen Martin, Buesen Roland, Hackermüller Jörg
Journal
Archives of Toxicology
Vol. 99
309–332
Keywords
Multi-omics, Toxicology, Chemical exposure, Risk assessment, Data integration
Date of publication
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Multi-omics data integration has been repeatedly discussed as the way forward to more comprehensively cover the molecular responses of cells or organisms to chemical exposure in systems toxicology and regulatory risk assessment. In Canzler et al. (Arch Toxicol 94(2):371–388. https://doi.org/10.1007/s00204-020-02656-y), we reviewed the state of the art in applying multi-omics approaches in toxicological research and chemical risk assessment. We developed best practices for the experimental design of multi-omics studies, omics data acquisition, and subsequent omics data integration. We found that multi-omics data sets for toxicological research questions were generally rare, with no data sets comprising more than two omics layers adhering to these best practices. Due to these limitations, we could not fully assess the benefits of different data integration approaches or quantitatively evaluate the contribution of various omics layers for toxicological research questions. Here, we report on a multi-omics study on thyroid toxicity that we conducted in compliance with these best practices. We induced direct and indirect thyroid toxicity through Propylthiouracil (PTU) and Phenytoin, respectively, in a 28-day plus 14-day recovery oral rat toxicity study. We collected clinical and histopathological data and six omics layers, including the long and short transcriptome, proteome, phosphoproteome, and metabolome from plasma, thyroid, and liver. We demonstrate that the multi-omics approach is superior to single-omics in detecting responses at the regulatory pathway level. We also show how combining omics data with clinical and histopathological parameters facilitates the interpretation of the data. Furthermore, we illustrate how multi-omics integration can hint at the involvement of non-coding RNAs in post-transcriptional regulation. Also, we show that multi-omics facilitates grouping, and we assess how much information individual and combinations of omics layers contribute to this approach.

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A critical review to identify data gaps and improve risk assessment of bisphenol A alternatives for human health
Authors
Mhaouty-Kodja Sakina, Zalko Daniel, Tait Sabrina, Testai Emanuela, Viguié Catherine, Corsini Emanuela, Grova Nathalie, Buratti Franca Maria, Cabaton Nicolas J., Coppola Lucia, De la Vieja Antonio, Dusinska Maria, El Yamani Naouale, Galbiati Valentina, Iglesias-Hernández Patricia, Kohl Yvonne, Maddalon Ambra, Marcon Francesca, Naulé Lydie, Rundén-Pran Elise, Salani Francesca, Santori Nicoletta, Torres-Ruiz Mónica, Turner Jonathan D., Adamovsky Ondrej, Aiello-Holden Kiara, Dirven Hubert, Louro Henriqueta, Silva Maria Joao
Journal
Critical Reviews in Toxicology
1-58
Keywords
Bisphenol A alternatives, Endocrine disruption, Metabolism, Toxicokinetic, Immunotoxicity, Developmental neurotoxicity, Genotoxicity, Carcinogenesis, Human health
Date of publication
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Bisphenol A (BPA), a synthetic chemical widely used in the production of polycarbonate plastic and epoxy resins, has been associated with a variety of adverse effects in humans including metabolic, immunological, reproductive, and neurodevelopmental effects, raising concern about its health impact. In the EU, it has been classified as toxic to reproduction and as an endocrine disruptor and was thus included in the candidate list of substances of very high concern (SVHC). On this basis, its use has 
been banned or restricted in some products. As a consequence, industries turned to bisphenol alternatives, such as bisphenol S (BPS) and bisphenol F (BPF), which are now found in various consumer products, as well as in human matrices at a global scale. However, due to their toxicity, these two bisphenols are in the process of being regulated. Other BPA alternatives, whose potential toxicity remains largely unknown due to a knowledge gap, have also started to be used in manufacturing processes. The gradual restriction of the use of BPA underscores the importance of understanding the potential risks associated with its alternatives to avoid regrettable substitutions. This review aims to summarize the current knowledge on the potential hazards related to BPA alternatives prioritized by European Regulatory Agencies based on their regulatory relevance and selected to be studied under the European Partnership for the Assessment of Risks from Chemicals (PARC): BPE, BPAP, BPP, BPZ, BPS-MAE, and TCBPA. The focus is on data related to toxicokinetic, endocrine disruption, immunotoxicity, developmental neurotoxicity, and genotoxicity/carcinogenicity, which were considered the most relevant endpoints to assess the hazard related to those substances. The goal here is to identify the data gaps in BPA alternatives toxicology and hence formulate the future directions that will be taken in the frame of the PARC project, which seeks also to enhance chemical risk assessment methodologies using new approach methodologies (NAMs).

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Extremely high levels of PBDEs in children’s toys from European markets: causes and implications for the circular economy
Authors
Olisah Chijioke , Melymuk Lisa, Audy Ondrej , Kukucka Petr , Pribylova Petra, Boudot Martin
Journal
Environmental Sciences Europe
Vol. 36
183
Keywords
Flame retardants, Consumer products, Plastic recycling, E-waste, Enforcement, Compliance
Date of publication
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Background

With the high influx of low-cost plastic toys on the market, there is growing concern about the safety of such toys. Some of these plastic toys contains hazardous chemicals like polybrominated diphenyl ethers (PBDEs) due to the use of recycled plastics in new toy manufacturing. Here, we investigated if toys marketed in Europe are compliant with EU directives to assess the safety of currently used children's toys and identify implications of PBDE content in toys.

Results

Eighty-four toys purchased from international toy retailers were screened for bromine using X-ray fluorescence (XRF), and 11 of those with bromine content higher than 500 µg/g were analyzed for ten PBDEs using GC–HRMS. PBDEs were detected in all 11 toys. Ʃ10PBDE concentrations ranged up to 23.5 mg/g (with a median concentration of 8.61 mg/g), with BDE-209 being the most abundant compound (4.40 mg/g). Eight samples exceeded the EU’s Low POP Content Limit (LPCL) of 500 µg/g for the Ʃ10PBDEs by 6–47 times and the Unintentional Trace Contaminant (UTC) limits of 10 µg/g for Deca-BDE by 12–800 times.

Conclusions

PBDEs were up to percent levels, suggesting direct recycling of flame retarded plastic, e.g., e-waste plastics, into toy components. This is a call for concern and requires intervention from all stakeholders involved in the toy market. Overall, the occurrence of non-compliant toys in the EU market, as indicated in this study is primarily attributed to gaps in regulations, inadequate legislation for recycled plastics, the rise of online sales, complexities in global and national supply chains, and economic challenges. Failure to address these issues will hinder the efforts of the plastics industry to transition into a circular economy. This suggests that more actions are needed to address gaps in cross-border enforcement, and stricter sanctions are required for toy manufacturers who fail to adhere to regulations and safety standards.

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Computational tools to facilitate early warning of new emerging risk chemicals
Authors
Farina Tariq, Lutz Ahrens, Nikiforos A. Alygizakis, Karine Audouze, Emilio Benfenati, Pedro N. Carvalho, Ioana Chelcea, Spyros Karakitsios, Achilleas Karakoltzidis, Vikas Kumar, Liadys Mora Lagares, Dimosthenis Sarigiannis, Gianluca Selvestrel, Olivier Taboureau, Katrin Vorkamp, Patrik L. Andersson
Journal
Toxics
Vol. 12
No. 10
736
Keywords
Early warning system (EWS), New and emerging risk chemicals (NERCs), Computational toxicology, Risk assessment, Artificial intelligence (AI), QSAR, Exposure assessment, Effect assessment
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Innovative tools suitable for chemical risk assessment are being developed in numerous domains, such as non-target chemical analysis, omics, and computational approaches. These methods will also be critical components in an efficient early warning system (EWS) for the identification of potentially hazardous chemicals. Much knowledge is missing for current use chemicals and thus computational methodologies complemented with fast screening techniques will be critical. This paper reviews current computational tools, emphasizing those that are accessible and suitable for the screening of new and emerging risk chemicals (NERCs). The initial step in a computational EWS is an automatic and systematic search for NERCs in literature and database sources including grey literature, patents, experimental data, and various inventories. This step aims at reaching curated molecular structure data along with existing exposure and hazard data. Next, a parallel assessment of exposure and effects will be performed, which will input information into the weighting of an overall hazard score and, finally, the identification of a potential NERC. Several challenges are identified and discussed, such as the integration and scoring of several types of hazard data, ranging from chemical fate and distribution to subtle impacts in specific species and tissues. To conclude, there are many computational systems, and these can be used as a basis for an integrated computational EWS workflow that identifies NERCs automatically.

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New approach methodologies to enhance human health risk assessment of immunotoxic properties of chemicals — a PARC (Partnership for the Assessment of Risk from Chemicals) project
Authors
Snapkow Igor, Smith Nicola M., Arnesdotter Emma, Beekmann Karsten, Blanc Etienne B., Braeuning Albert, Corsini Emanuela, Dolenc Marija Sollner, Duivenvoorde Loes P. M., Eriksen Gunnar Sundstøl, Franko Nina, Galbiati Valentina, Gostner Johanna M., Grova Nathalie, Gutleb Arno C., Hargitai Rita, Janssen Aafke W. F., Krapf Solveig A., Lindeman Birgitte, Lumniczky Katalin, Maddalon Ambra, Mollerup Steen, Parráková Lucia, Pierzchalski Arkadiusz, Pieters Raymond H. H., Silva Maria J., Solhaug Anita, Staal Yvonne C. M., Straumfors Anne, Szatmári Tünde, Turner Jonathan D., Vandebriel Rob J., Zenclussen Ana Claudia, Barouki Robert
Journal
Frontiers in Toxicology
Vol. 6
1339104
Keywords
PARC, New approach methodologies, NAMs, Immunotoxicology, Immunosuppression, Regulatory toxicology, Chemical toxicology
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As a complex system governing and interconnecting numerous functions within the human body, the immune system is unsurprisingly susceptible to the impact of toxic chemicals. Toxicants can influence the immune system through a multitude of mechanisms, resulting in immunosuppression, hypersensitivity, increased risk of autoimmune diseases and cancer development. At present, the regulatory assessment of the immunotoxicity of chemicals relies heavily on rodent models and a limited number of Organisation for Economic Co-operation and Development (OECD) test guidelines, which only capture a fraction of potential toxic properties. Due to this limitation, various authorities, including the World Health Organization and the European Food Safety Authority have highlighted the need for the development of novel approaches without the use of animals for immunotoxicity testing of chemicals. In this paper, we present a concise overview of ongoing efforts dedicated to developing and standardizing methodologies for a comprehensive characterization of the immunotoxic effects of chemicals, which are performed under the EU-funded Partnership for the Assessment of Risk from Chemicals (PARC).

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A conceptual framework for landscape-based environmental risk assessment (ERA) of pesticides
Authors
Tarazona Jose V., de Alba-Gonzalez Mercedes, Bedos Carole, Benoit Pierre, Bertrand Colette, Crouzet Olivier, Dagès Cécile, CM Dorne Jean-Lou, Fernandez-Agudo Ana, Focks Andreas, Gonzalez-Caballero Maria del Carmen, Kroll Alexandra, Liess Matthias, Loureiro Susana, Ortiz-Santaliestra Manuel E., Rasmussen Jes J., Royauté Raphaël, Rundlöf Maj, Schäfer Ralf B., Short Stephen, Siddique Ayesha, Sousa José Paulo, Spurgeon Dave, Staub Pierre-François, Topping Chris J., Voltz Marc, Axelman Johan, Aldrich Annette, Duquesne Sabine, Mazerolles Vanessa, Devos Yann
Journal
Environment International
Vol. 191
108999
Keywords
Functional ecotoxicology, Landscape, Modelling, Pesticide exposure and effects, Biodiversity, Ecological framework
Date of publication
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While pesticide use is subject to strict regulatory oversight worldwide, it remains a main concern for environmental protection, including biodiversity conservation. This is partly due to the current regulatory approach that relies on separate assessments for each single pesticide, crop use, and non-target organism group at local scales. Such assessments tend to overlook the combined effects of overall pesticide usage at larger spatial scales. Integrative landscape-based approaches are emerging, enabling the consideration of agricultural management, the environmental characteristics, and the combined effects of pesticides applied in a same or in different crops within an area. These developments offer the opportunity to deliver informative risk predictions relevant for different decision contexts including their connection to larger spatial scales and to combine environmental risks of pesticides, with those from other environmental stressors. We discuss the needs, challenges, opportunities and available tools for implementing landscape-based approaches for prospective and retrospective pesticide Environmental Risk Assessments (ERA). A set of “building blocks” that emerged from the discussions have been integrated into a conceptual framework. The framework includes elements to facilitate its implementation, in particular: flexibility to address the needs of relevant users and stakeholders; means to address the inherent complexity of environmental systems; connections to make use of and integrate data derived from monitoring programs; and options for validation and approaches to facilitate future use in a regulatory context. The conceptual model can be applied to existing ERA methodologies, facilitating its comparability, and highlighting interoperability drivers at landscape level. The benefits of landscape-based pesticide ERA extend beyond regulation. Linking and validating risk predictions with relevant environmental impacts under a solid science-based approach will support the setting of protection goals and the formulation of sustainable agricultural strategies. Moreover, landscape ERA offers a communication tool on realistic pesticide impacts in a multistressors environment for stakeholders and citizens.

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Associations between urinary phthalate metabolites with BDNF and behavioral function among european children from five HBM4EU aligned studies
Authors
Salamanca-Fernandez Elena, Espín-Moreno Lydia, Olivas-Martínez Alicia, Pérez-Cantero Ainhoa, Martín-Rodríguez José L., Poyatos Rafael M., Barbone Fabio, Rosolen Valentina, Mariuz Marika, Ronfani Luca, Palkovičová Murínová Ľubica, Fábelová Lucia, Szigeti Tamás, Kakucs Réka, Sakhi Amrit K., Haug Line S., Lindeman Birgitte, Snoj Tratnik Janja, Kosjek Tina, Jacobs Griet, Voorspoels Stefan, Jurdáková Helena, Górová Renáta, Petrovičová Ida, Kolena Branislav, Esteban Marta, Pedraza-Díaz Susana, Kolossa-Gehring Marike, Remy Sylvie, Govarts Eva, Schoeters Greet, Fernández Mariana F., Mustieles Vicente
Journal
Toxics
Vol. 12
No. 9
642
Keywords
Phthalate, Behavior, BDNF, Effect biomarker, Exposure biomarker, HBM4EU, PARC
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Based on toxicological evidence, children’s exposure to phthalates may contribute to altered neurodevelopment and abnormal regulation of brain-derived neurotrophic factor (BDNF). We analyzed data from five aligned studies of the Human Biomonitoring for Europe (HBM4EU) project. Ten phthalate metabolites and protein BDNF levels were measured in the urine samples of 1148 children aged 6–12 years from Italy (NACII-IT cohort), Slovakia (PCB-SK cohort), Hungary (InAirQ-HU cohort) and Norway (NEBII-NO). Serum BDNF was also available in 124 Slovenian children (CRP-SLO cohort). Children’s total, externalizing and internalizing behavioral problems were assessed using the Child Behavior Checklist at 7 years of age (only available in the NACII-IT cohort). Adjusted linear and negative binomial regression models were fitted, together with weighted quantile sum (WQS) regression models to assess phthalate mixture associations. Results showed that, in boys but not girls of the NACII-IT cohort, each natural-log-unit increase in mono-n-butyl phthalate (MnBP) and Mono(2-ethyl-5-oxohexyl) phthalate (MEOHP) was cross-sectionally associated with higher externalizing problems [incidence rate ratio (IRR): 1.20; 95% CI: 1.02, 1.42 and 1.26; 95% CI: 1.03, 1.55, respectively]. A suggestive mixture association with externalizing problems was also observed per each tertile mixture increase in the whole population (WQS—IRR = 1.15; 95% CI: 0.97, 1.36) and boys (IRR = 1.20; 95% CI: 0.96, 1.49). In NACII-IT, PCB-SK, InAirQ-HU and NEBII-NO cohorts together, urinary phthalate metabolites were strongly associated with higher urinary BDNF levels, with WQS regression confirming a mixture association in the whole population (percent change (PC) = 25.9%; 95% CI: 17.6, 34.7), in girls (PC = 18.6%; 95% CI: 7.92, 30.5) and mainly among boys (PC = 36.0%; 95% CI: 24.3, 48.9). Among CRP-SLO boys, each natural-log-unit increase in ∑DINCH concentration was associated with lower serum BDNF levels (PC: −8.8%; 95% CI: −16.7, −0.3). In the NACII-IT cohort, each natural-log-unit increase in urinary BDNF levels predicted worse internalizing scores among all children (IRR: 1.15; 95% CI: 1.00, 1.32). Results suggest that (1) children’s exposure to di-n-butyl phthalate (DnBP) and di(2-ethylhexyl) phthalate (DEHP) metabolites is associated with more externalizing problems in boys, (2) higher exposure to DINCH may associate with lower systemic BDNF levels in boys, (3) higher phthalate exposure is associated with higher urinary BDNF concentrations (although caution is needed since the possibility of a “urine concentration bias” that could also explain these associations in noncausal terms was identified) and (4) higher urinary BDNF concentrations may predict internalizing problems. Given this is the first study to examine the relationship between phthalate metabolite exposure and BDNF biomarkers, future studies are needed to validate the observed associations.

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Evaluation of THP-1 and jurkat cell lines coculture for the in vitro assessment of the effects of immunosuppressive substances
Journal
Toxics
Vol. 12
No. 8
607
Keywords
Immunosuppression, Coculture, In vitro, New approach method, Cell lines, Bisphenols
Date of publication
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The strong appeal to reduce animal testing calls for the development and validation of in vitro, in chemico and in silico models that would replace the need for in vivo testing and ex vivo materials. A category that requires such new approach methods is the assessment of immunosuppression that can be induced by chemicals including environmental pollutants. To assess the immunosuppressive action on monocytes and lymphocytes, we mimicked the whole-blood cytokine-release assay by preparing an in vitro coculture of THP-1 and Jurkat cell lines. We optimised its activation and investigated the effects of known immunosuppressive drugs with different mechanisms of action on the release of proinflammatory cytokines. Decreased secretion of IL-8 was achieved by several immunosuppressive mechanisms and was therefore selected as an appropriate marker of immunosuppression. A set of environmentally occurring bisphenols, BPA, BPAP, BPP, BPZ, BPE, TCBPA and BPS-MAE, were then applied to the model and BPP and BPZ were found to act as potent immunosuppressants at micromolar concentrations.

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Adverse outcomes of the newly emerging bisphenol A substitutes
Authors
Franko Nina, Kodila Anja, Dolenc Marija Sollner
Journal
Chemosphere
Vol. 364
143147
Keywords
BPA substitutes, Thermal paper, Endocrine disruption, Adverse outcomes, Bisphenol occurrence, Pergafast 201
Date of publication
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BPA and its analogues are facing increasingly stringent regulations restricting their use due to the increasing knowledge of their harmful effects. It is therefore expected that novel BPA analogues and alternatives will replace them in plastic products, cans and thermal paper to circumvent restrictions imposed by legislation. This raises concerns about the safety of "BPA-free" products, as they contain BPA substitutes whose safety has not been sufficiently assessed prior to their market introduction. The regulatory agencies have recognised BPAP, BPBP, BPC2, BPE, BPFL, BPG, BPP, BPPH, BPS-MAE, BPS-MPE, BP-TMC, BPZ and the alternatives BTUM, D-90, UU and PF201 as compound with insufficient data regarding their safety. We demonstrate that the mentioned compounds are present in consumer products, food and the environment, thus exhibiting toxicological risk not only to humans, but also to other species where their toxic effects have already been described. Results of in silicoin vitro and in vivo studies examining the endocrine disruption and other effects of BPA analogues show that they disrupt the endocrine system by targeting various nuclear receptors, impairing reproductive function and causing toxic effects such as hepatotoxicity, altered behaviour and impaired reproductive function. In vitro and in vivo data on BPA alternatives are literally non-existent, although these compounds are already present in commonly used thermal papers. However, in silico studies predicted that they might cause adverse effects as well. The aim of this article is to comprehensively collate the information on selected BPA substitutes to illustrate their potential toxicity and identify safety gaps.

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A short-term exposure to saxitoxin triggers a multitude of deleterious effects in Daphnia magna at levels deemed safe for human health
Authors
Ribeiro Pinto Albano, Asselman Jana, Pereira Patricia, Pereira Joana Luisa, Macário Inês P.E., Marques Sérgio M, Lourenço Joana, Domingues Inês, Botelho Maria João
Journal
Science of The Total Environment
Vol. 951
175431
Keywords
Neurotoxins, Harmful algal blooms, Cyanotoxins, Saxitoxins, Oxidative stress biomarkers, Epigenetic biomarkers
Date of publication
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Harmful algal blooms and the toxins produced during these events are a human and environmental health concern worldwide. Saxitoxin and its derivatives are potent natural aquatic neurotoxins produced by certain freshwater cyanobacteria and marine algae species during these bloom events. Saxitoxins effects on human health are well studied, however its effects on aquatic biota are still largely unexplored. This work aims at evaluating the effects of a pulse acute exposure (24 h) of the model cladoceran Daphnia magna to 30 μg saxitoxin L−1, which corresponds to the safety guideline established by the World Health Organization (WHO) for these toxins in recreational freshwaters. Saxitoxin effects were assessed through a comprehensive array of biochemical (antioxidant enzymes activity and lipid peroxidation), genotoxicity (alkaline comet assay), neurotoxicity (total cholinesterases activity), behavioral (swimming patterns), physiological (feeding rate and heart rate), and epigenetic (total 5-mC DNA methylation) biomarkers. Exposure resulted in decreased feeding rate, heart rate, total cholinesterases activity and catalase activity. Contrarily, other antioxidant enzymes, namely glutathione-S-transferases and selenium-dependent Glutathione peroxidase had their activity increased, together with lipid peroxidation levels. The enhancement of the antioxidant enzymes was not sufficient to prevent oxidative damage, as underpinned by lipid peroxidation enhancement. Accordingly, average DNA damage level was significantly increased in STX-exposed daphnids. Total DNA 5-mC level was significantly decreased in exposed organisms. Results showed that even a short-term exposure to saxitoxin causes significant effects on critical molecular and cellular pathways and modulates swimming patterns in D. magna individuals. This study highlights sub-lethal effects caused by saxitoxin in D. magna, suggesting that these toxins may represent a marked challenge to their thriving even at a concentration deemed safe for humans by the WHO.

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A systematic workflow for compliancetesting of emerging international classwide restrictions on PFAS
Authors
Vestergren Robin, Appelblom Anders, Bălan Simona A., Brandsma Sicco H., Bruton Thomas A., Cousins Ian T., Gauthier Jeremy R., Heggelund Audun, Ivarsson Jenny, Kärrman Anna, Melymuk Lisa, Olisah Chijioke, Rosen Amanda, Savvidou Eleni K., Schellenberger Steffen, Skedung Lisa, Talasniemi Petteri, Wickman Tonie, Zweigle Jonathan, Zwiener Christian, Benskin Jonathan P.
Journal
Environmental Science & Technology
Vol. 58
No. 34
14968−14972
Keywords
PFAS, Compliance testing, Analytical methods, Classwide restrictions
Date of publication
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The poorly reversible risks to human health and ecosystems from contamination with per- and polyfluoroalkyl substances (PFAS) have led many researchers and regulators worldwide to call for a classwide ban of these so-called forever chemicals. As part of the EU Chemicals Strategy for Sustainability, the national authorities of five European countries submitted a broad restriction proposal on PFAS under REACH in January 2023. This restriction proposal is unique in its scope by including the vast majority of uses for >10 000 substances that meet the OECD definition of PFAS. In parallel, several countries and multiple states in the United States have proposed or enacted broad PFAS restrictions for all non-essential uses or for specific uses and reporting requirements for a range of consumer products. Although the regulatory frameworks underpinning these restrictions contain many differences, the proposed restrictions have the common objective to ban the intentional use of all PFAS and thus avoid regrettable substitution with other PFAS. Given that the proposed restrictions apply to chemical products and articles (both hereafter termed simply “products”) that are imported from other states, countries, or regions, they may also trigger substitution and an increased demand for supply chain information on a global level. Direct communication with manufacturers and distributors is typically the primary approach for companies to ensure compliance with chemical regulations. Nevertheless, companies and authorities require reliable analytical methods to independently verify supply chain information and capture products that are noncompliant with PFAS restrictions.
A major challenge for compliance testing stems from the sheer number and structural diversity of PFAS, making it impossible for a single analytical method to quantify all PFAS individually. There are, however, a growing number of analytical methods that can indicate the presence of PFAS by leveraging certain characteristics of these chemicals. Building on the recent advances in the analytical chemistry of PFAS, we discuss the currently available analytical methods that can inform compliance testing of PFAS in different products under different regulatory frameworks while highlighting the advantages and remaining challenges associated with these methods. We then illustrate how these methods could be applied in a three-step workflow for the implementation of the PFAS restriction proposal under REACH. Notably, this Viewpoint is not intended to review or comment on individual or classwide PFAS risk assessments that have been carried out by different authorities but rather to present an approach for ensuring compliance with these new laws based on recent advances in analytical chemistry.
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Pioneering an effect-based early warning system for hazardous chemicals in the environment
Authors
Niarchos Georgios, Alygizakis Nikiforos, Carere Mario, Dulio Valeria, Engwall Magnus, Hyötyläinen Tuulia, Kallenborn Roland, Karakitsios Spyros, Karakoltzidis Achilleas, Kärrman Anna, Lamoree Marja, Larsson Maria, Lundqvist Johan, Mancini Laura, Mottaghipisheh Javad, Rostkowski Pawel, Sarigiannis Dimosthenis, Vorkamp Katrin, Ahrens Lutz
Journal
TrAC Trends in Analytical Chemistry
Vol. 180
No. November 2024
117901
Keywords
Contaminants of emerging concern, Bioassays, Effect-based methods, Effect-directed analysis, Environmental monitoring, Toxicity
Date of publication
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Existing regulatory frameworks often prove inadequate in identifying contaminants of emerging concern (CECs) and determining their impacts on biological systems at an early stage. The establishment of Early Warning Systems (EWSs) for CECs is becoming increasingly relevant for policy-making, aiming to proactively detect chemical hazards and implement effective mitigation measures. Effect-based methodologies, including bioassays and effect-directed analysis (EDA), offer valuable input to EWSs with a view to pinpointing the relevant toxicity drivers and prioritizing the associated risks. This review evaluates the analytical techniques currently available to assess biological effects, and provides a structured plan for their systematic integration into an EWS for hazardous chemicals in the environment. Key scientific advancements in effect-based approaches and EDA are discussed, underscoring their potential for early detection and management of chemical hazards. Additionally, critical challenges such as data integration and regulatory alignment are addressed, emphasizing the need for continuous improvement of the EWS and the incorporation of analytical advancements to safeguard environmental and public health from emerging chemical threats.

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High precision blood lead radiogenic isotope signatures in a community exposed to Pb contaminated soils and implications for the current Pb exposure of the European population
Authors
Petit Jérôme C.J., Mattielli Nadine , De Jong Jeroen , Bouhoulle Elodie , Debouge Wendy , Maggi Patrick , Hublet Geneviève , Fagel Nathalie , Pirard Catherine , Charlier Corinne , Suzanne Remy
Journal
Science of The Total Environment
Vol. 950
174763
Keywords
Epidemiology, Biokinetic model, Urban environment, Allotment garden, Historical metallurgy, Isotope forensics
Date of publication
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Our study provides the most comprehensive dataset for high-precision radiogenic isotopes of lead (Pb) in blood for the western European population. It investigates their potential for elucidating the contribution of soil Pb to blood Pb using a human biomonitoring survey involving 81 adults and 4 children living in the urban area of Liège (Belgium). Soils in the area show moderate (median of 360 mg/kg) to high (95th percentile of 1000 mg/kg) Pb concentrations, due to former metal processing activities. Blood lead levels (BLL) measured in the study population are, on average, quantitatively consistent with a ∼ 20 % increase due to the exposure to Pb from soils, as estimated by a single-compartment biokinetic model. Consistently, its isotopic composition does not represent an endmember that fully accounts for the variability of Blood lead isotope (BLI) compositions measured in the study population. While some individuals show more thorogenic BLI ratios (relatively more enriched in 208Pb), which could be consistent with a greater exposure to local soils and/or by their country of birth, the BLI data mostly follow a trend roughly parallel to the European Standard Lead Pollution (ESLP) line, within the European leaded gasoline field, even two decades after the withdrawal of this source. Differences in BLI are probably associated with factors related to the presence of Pb in dwellings (pipes, paint) and drinking water distribution system, suggesting that the anthropogenic Pb in use, relevant to human exposure, may contain ore components of different origins, including the Australian Pb ore signature.

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Chemical respiratory sensitization
Authors
Hargitai Rita, Parráková Lucia, Szatmári Tünde, Monfort-Lanzas Pablo, Galbiati Valentina, Audouze Karine, Jornod Florence, Staal Yvonne C. M., Burla Sabina, Chary Aline, Gutleb Arno C., Lumniczky Katalin, Vandebriel Rob J., Gostner Johanna M.
Journal
Frontiers in Toxicology
Vol. 6
1331803
Keywords
Adverse outcome pathway (AOP), Chemical respiratory allergy, Chemical sensitizer, Chemical-induced hypersensitivity, Key event, New approach methodology (NAM), Occupational asthma, Respiratory sensitization
Date of publication
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Respiratory sensitization is a complex immunological process eventually leading to hypersensitivity following re-exposure to the chemical. A frequent consequence is occupational asthma, which may occur after long latency periods. Although chemical-induced respiratory hypersensitivity has been known for decades, there are currently no comprehensive and validated approaches available for the prospective identification of chemicals that induce respiratory sensitization, while the expectations of new approach methodologies (NAMs) are high. A great hope is that due to a better understanding of the molecular key events, new methods can be developed now. However, this is a big challenge due to the different chemical classes to which respiratory sensitizers belong, as well as because of the complexity of the response and the late manifestation of symptoms. In this review article, the current information on respiratory sensitization related processes is summarized by introducing it in the available adverse outcome pathway (AOP) concept. Potentially useful models for prediction are discussed. Knowledge gaps and gaps of regulatory concern are identified.

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Investigation of peroxisome proliferator-activated receptor genes as requirements for visual startle response hyperactivity in larval zebrafish exposed to structurally similar per- and polyfluoroalkyl substances (PFAS)
Authors
Gutsfeld Sebastian, Wehmas Leah, Omoyeni Ifeoluwa, Schweiger Nicole, Leuthold David, Michaelis Paul, Howey Xia Meng, Gaballah Shaza, Herold Nadia, Vogs Carolina, Wood Carmen, Bertotto Luísa, Wu Gi-Mick, Klüver Nils, Busch Wibke, Scholz Stefan, Schor Jana, Tal Tamara
Journal
Environmental Health Perspectives
Vol. 132
No. 7
077007
Date of publication
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Background:
Per- and polyfluoroalkyl Substances (PFAS) are synthetic chemicals widely detected in humans and the environment. Exposure to perfluorooctanesulfonic acid (PFOS) or perfluorohexanesulfonic acid (PFHxS) was previously shown to cause dark-phase hyperactivity in larval zebrafish.
Objectives:
The objective of this study was to elucidate the mechanism by which PFOS or PFHxS exposure caused hyperactivity in larval zebrafish.
Methods:
Swimming behavior was assessed in 5-d postfertilization (dpf) larvae following developmental (1–4 dpf) or acute (5 dpf) exposure to 0.43–7.86μ⁢M PFOS, 7.87–120μ⁢M PFHxS, or 0.4% dimethyl sulfoxide (DMSO). After developmental exposure and chemical washout at 4 dpf, behavior was also assessed at 5–8 dpf. RNA sequencing was used to identify differences in global gene expression to perform transcriptomic benchmark concentration–response (BMCT) modeling, and predict upstream regulators in PFOS- or PFHxS-exposed larvae. CRISPR/Cas9-based gene editing was used to knockdown peroxisome proliferator-activated receptors (ppars) pparaa/ab, pparda/db, or pparg at day 0. Knockdown crispants were exposed to 7.86μ⁢M PFOS or 0.4% DMSO from 1–4 dpf and behavior was assessed at 5 dpf. Coexposure with the ppard antagonist GSK3787 and PFOS was also performed.
Results:
Transient dark-phase hyperactivity occurred following developmental or acute exposure to PFOS or PFHxS, relative to the DMSO control. In contrast, visual startle response (VSR) hyperactivity only occurred following developmental exposure and was irreversible up to 8 dpf. Similar global transcriptomic profiles, BMCT estimates, and enriched functions were observed in PFOS- and PFHxS-exposed larvae, and ppars were identified as putative upstream regulators. Knockdown of pparda/db, but not pparaa/ab or pparg, blunted PFOS-dependent VSR hyperactivity to control levels. This finding was confirmed via antagonism of ppard in PFOS-exposed larvae.
Discussion:
This work identifies a novel adverse outcome pathway for VSR hyperactivity in larval zebrafish. We demonstrate that developmental, but not acute, exposure to PFOS triggered persistent VSR hyperactivity that required ppard function.

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Cross-mapping of terms used in chemical risk assessment with those used in systematic review: research protocol
Authors
Svendsen Camilla, Mathisen Gro Haarklou, Vist Gunn E., Husøy Trine, Ames Heather, Beronius Anna, Di Consiglio Emma, Druwe Ingrid, Hartung Thomas, Hoffmann Sebastian, Hooijmans Carlijn R., Machera Kyriaki, Robinson Joshua F. , Roggen Erwin, Rooney Andrew A., Roth Nicolas, Spilioti Eliana, Spyropoulou Anastasia, Tcheremenskaia Olga, Testai Emanuela, Vinken Mathieu, Whaley Paul
Journal
Evidence-Based Toxicology
Vol. 2
No. 1
22371285
Keywords
Conceptual overlap, Cross-mapping, Definitions, Interoperability, Terminology
Date of publication
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The focus on implementation of systematic review (SR) principles in chemical risk assessments (CRAs) is growing as it has the potential to advance the rigour and transparency of the CRAs. However, the SR and CRA communities use their own specific terminologies. Understanding the meaning of core SR and CRA terms and where they overlap is critical for application of SR methods and principles in CRAs. Moreover, it will increase the possibility for cross-sectorial collaboration, avoid misunderstandings, and improve communication among risk assessors, researchers, and policy makers.

We present a process for the cross-mapping of core CRA terms and core SR terms. Core terms for study appraisal, evidence synthesis and integration used in the SR and CRA communities will be included. The outcome will be an overview of how core SR terms map onto core CRA terms and vice versa, and a description of the relationship and conceptual overlap between the terms.

The cross-mapping is divided in three phases, where in the first phase the core SR and CRA terms will be identified. In the second phase, existing SR and CRA definitions will be mapped. In the third phase, descriptions of the relationship and conceptual overlap between the terms will be derived. The third phase will include weekly one-hour online meetings for SR and CRA experts.

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Progress, applications, and challenges in high-throughput effect-directed analysis for toxicity driver identification
Authors
Alvarez Mora Iker, Arturi Katarzyna, Béen Frederic, Buchinger Sebastian, El Mais Abd El Rahman, Gallampois Christine, Hahn Meike, Hollender Juliane, Houtman Corine, Johann Sarah, Krauss Martin, Lamoree Marja, Margalef Maria, Massei Riccardo, Brack Werner, Muz Melis
Journal
Analytical and Bioanalytical Chemistry
Vol. 417
451-472
Keywords
HT-EDA, NTS, Bioanalytical methods, Mass spectrometry
Date of publication
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The rapid increase in the production and global use of chemicals and their mixtures has raised concerns about their potential impact on human and environmental health. With advances in analytical techniques, in particular, high-resolution mass spectrometry (HRMS), thousands of compounds and transformation products with potential adverse effects can now be detected in environmental samples. However, identifying and prioritizing the toxicity drivers among these compounds remain a significant challenge. Effect-directed analysis (EDA) emerged as an important tool to address this challenge, combining biotesting, sample fractionation, and chemical analysis to unravel toxicity drivers in complex mixtures. Traditional EDA workflows are labor-intensive and time-consuming, hindering large-scale applications. The concept of high-throughput (HT) EDA has recently gained traction as a means of accelerating these workflows. Key features of HT-EDA include the combination of microfractionation and downscaled bioassays, automation of sample preparation and biotesting, and efficient data processing workflows supported by novel computational tools. In addition to microplate-based fractionation, high-performance thin-layer chromatography (HPTLC) offers an interesting alternative to HPLC in HT-EDA. This review provides an updated perspective on the state-of-the-art in HT-EDA, and novel methods/tools that can be incorporated into HT-EDA workflows. It also discusses recent studies on HT-EDA, HT bioassays, and computational prioritization tools, along with considerations regarding HPTLC. By identifying current gaps in HT-EDA and proposing new approaches to overcome them, this review aims to bring HT-EDA a step closer to monitoring applications.

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Predicting the combined effects of multiple stressors and stress adaptation in Gammarus pulex
Journal
Environmental Science & Technology
Vol. 58
No. 29
12899-12908
Keywords
Combined effects, Mixture toxicity, Fitness costs, Genetic adaptation
Date of publication
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Global change confronts organisms with multiple stressors causing nonadditive effects. Persistent stress, however, leads to adaptation and related trade-offs. The question arises: How can the resulting effects of these contradictory processes be predicted? Here we show that Gammarus pulex from agricultural streams were more tolerant to clothianidin (mean EC50 148 μg/L) than populations from reference streams (mean EC50 67 μg/L). We assume that this increased tolerance results from a combination of physiological acclimation, epigenetic effects, and genetic evolution, termed as adaptation. Further, joint exposure to pesticide mixture and temperature stress led to synergistic interactions of all three stressors. However, these combined effects were significantly stronger in adapted populations as shown by the model deviation ratio (MDR) of 4, compared to reference populations (MDR = 2.7). The pesticide adaptation reduced the General-Stress capacity of adapted individuals, and the related trade-off process increased vulnerability to combined stress. Overall, synergistic interactions were stronger with increasing total stress and could be well predicted by the stress addition model (SAM). In contrast, traditional models such as concentration addition (CA) and effect addition (EA) substantially underestimated the combined effects. We conclude that several, even very disparate stress factors, including population adaptations to stress, can act synergistically. The strong synergistic potential underscores the critical importance of correctly predicting multiple stresses for risk assessment.

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Automated liquid handling extraction and rapid quantification of underivatized  amino acids and tryptophan metabolites from human serum and plasma using dual-column U(H)PLC-MRM-MS and its application to prostate cancer study
Authors
Kipura Tobias, Hotze Madlen, Hofer Alexa, Egger Anna-Sophia, Timpen Lea E., Opitz Christiane A., Townsend Paul A., Gethings Lee A., Thedieck Kathrin, Kwiatkowski Marcel
Journal
Metabolites
Vol. 14
No. 7
370
Keywords
Tryptophan metabolites analysis, LC-MS, Mixed-mode chromatography
Date of publication
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Amino acids (AAs) and their metabolites are important building blocks, energy sources, and signaling molecules associated with various pathological phenotypes. The quantification of AA and tryptophan (TRP) metabolites in human serum and plasma is therefore of great diagnostic interest. Therefore, robust, reproducible sample extraction and processing workflows as well as rapid, sensitive absolute quantification are required to identify candidate biomarkers and to improve screening methods. We developed a validated semi-automated robotic liquid extraction and processing workflow and a rapid method for absolute quantification of 20 free, underivatized AAs and six TRP metabolites using dual-column U(H)PLC-MRM-MS. The extraction and sample preparation workflow in a 96-well plate was optimized for robust, reproducible high sample throughput allowing for transfer of samples to the U(H)PLC autosampler directly without additional cleanup steps. The U(H)PLC-MRM-MS method, using a mixed-mode reversed-phase anion exchange column with formic acid and a high-strength silica reversed-phase column with difluoro-acetic acid as mobile phase additive, provided absolute quantification with nanomolar lower limits of quantification within 7.9 min. The semi-automated extraction workflow and dual-column U(H)PLC-MRM-MS method was applied to a human prostate cancer study and was shown to discriminate between treatment regimens and to identify metabolites responsible for discriminating between healthy controls and patients on active surveillance.

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Occupational exposure limits for reproductive toxicants – A comparative analysis
Authors
Schenk Linda, Ho Meng-Rung, Taxell Piia, Huuskonen Pasi, Leite Mimmi, Martinsone Inese, Nordby Karl-Christian, Paegle Linda, Strumylaite Loreta
Journal
Reproductive Toxicology
Vol. 128
108649
Keywords
Health risk assessment, Industrial hygiene, Maximum allowable concentration, Route-to-route extrapolation, Uncertainty factors, TLV, DNEL, Reproductive toxicology
Date of publication
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We investigated the level of protection of reproductive and developmental toxicity offered through occupational exposure limits (OELs) and Derived No-Effect Levels for workers’ inhalation exposure (wDNELs). We compared coverage of substances that have a harmonised classification as reproductive toxicant 1 A or 1B (Repr.1 A/B), numerical values and scientific basis of 12 lists of OELs and wDNELs from REACH Registrants’ and the Committee for Risk Assessment. Across the 14 sources of OELs and wDNELs, 53 % of the Repr1A/B-substances had at least one exposure limit (counting groups of metals as one entry). Registrants’ wDNELs covered the largest share, 40 %. The numerical values could be highly variable for the same substance across the lists. How often reproductive toxicity is identified as the critical effect varies between the examined lists, both due to different assessments of the same substance and different substance coverage. Reviewing the margin of safety to reproductive toxicity cited in the documents, we found that 15 % of safety margins were lower to reproductive toxicity than the critical effect. To conclude, neither the REACH nor work environment legislation supply wDNELs or OELs for a substantial share of known reproductive toxicants. EU OELs cover among the fewest substances in the range, and in many cases national OELs or wDNELs are set at more conservative levels.

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Method optimization for a simultaneous determination of neonicotinoid, carbamate/thiocarbamate, triazole, organophosphate and pyrethroid pesticides and their metabolites in urine using UPLC-MS/MS
Journal
Journal of Chromatography A
Vol. 1730
465054
Keywords
Human biomonitoring, Neonicotinoid pesticides, Method optimization, UPLC-MS/MS, Urinary metabolites
Date of publication
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An accurate and sensitive method for the determination of a total of 23 pesticides and their metabolites in human urine has been optimised. The methodology is based on a previously published method based on solid-phase extraction with methanol and acetone followed by ultra-performance liquid chromatography coupled to tandem mass spectrometry (UPLC-MS/MS) in the selected reaction mode (SRM) with both positive and negative electrospray ionization (ESI+/-). The detection settings of the previous method, which allowed to determine the metabolites from 6 organophosphate and 2 pyrethroid pesticides, were optimised in order to include further pesticide groups, such as 11 neonicotinoids, 3 carbamates/thiocarbamates and 2 triazoles. The 5-windows method enduring 22 min was optimized with acceptable results in relation to accuracy (recoveries >75 %), precision (coefficients of variation <26 %) and linearity (R2> 0.9915). The limits of detection ranged between 0.012 ng/mL and 0.058 ng/mL. Samples from the German External Quality Assessment Scheme (G-EQUAS) encompassing 2 pyrethroids, 2 organophosphate and one neonicotinoid (6-chloronicotinic acid, a common metabolite of imidacloprid and acetamiprid) were analysed, and the latter, included in this newest optimization, provided good reference results. The method is optimal as a human biomonitoring tool for health risk assessment in large population surveys.

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Internal flames: Metal(loid) exposure linked to alteration of the lipid profile in Czech male firefighters (CELSPAC-FIREexpo study)
Authors
Pálešová Nina, Řiháčková Katarína, Kuta Jan, Pindur Aleš, Šebejová Ludmila, Čupr Pavel
Journal
Environmental Science & Technology Letters
Vol. 7
No. 11
679–686
Keywords
Firefighters, Occupational exposure, Metals, Cholesterol, Cardiovascular disease, Mixture analysis
Date of publication
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Increased wildfire activity increases the demands onfire rescue services and firefighters’ contact with harmful chemicals.This study aimed to determine firefighters’ exposure to toxicmetal(loid)s and its association with the lipid profile. CELSPAC-FIREexpo study participants (including 110 firefighters) providedurine and blood samples to quantify urinary levels of metal(loid)s (arsenic, cadmium (Cd), mercury and lead (Pb)) and serum lipidbiomarkers (cholesterol (CHOL), low-density lipoprotein choles-terol (LDL), high-density lipoprotein cholesterol (HDL), and triglycerides (TG)). The associations were investigated by usingmultiple linear regression and Bayesian weighted quantile sum(BWQS) regression. Higher levels of Pb were observed infirefighters. Pb was positively associated with CHOL and TG.Cd was negatively associated with HDL. In the BWQS model, the mixture of metal(loid)s was associated positively with CHOL (β =14.75, 95% CrI = 2.45−29.08), LDL (β = 15.14, 95% CrI = 3.39−29.35) and TG (β = 14.79, 95% CrI = 0.73−30.42), whilenegatively with HDL (β = −14.96, 95% CrI = −25.78 to −1.8). Pb emerged as a key component in a metal(loid) mixture. Theresults suggest that higher exposure to lead and the mixture of metal(loid)s is associated with the alteration of the lipid profile, whichcan result in an unfavorable cardiometabolic profile, especially in occupationally exposed firefighters.

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Effects of metabolic disruption on lipid metabolism and yolk retention in zebrafish embryos
Journal
Environmental Toxicology and Chemistry
Vol. 43
No. 8
1880-1893
Keywords
Aquatic toxicology, Developmental toxicity, Endocrine-disrupting compounds, Toxicity mechanisms
Date of publication
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A subgroup of endocrine-disrupting chemicals have the ability to disrupt metabolism. These metabolism-disrupting chemicals (MDCs) can end up in aquatic environments and lead to adverse outcomes in fish. Although molecular and physiological effects of MDCs have been studied in adult fish, few studies have investigated the consequences of metabolic disruption in fish during the earliest life stages. To investigate the processes affected by metabolic disruption, zebrafish embryos were exposed to peroxisome proliferator–activated receptor gamma (PPARγ) agonist rosiglitazone, the PPARγ antagonist T0070907, and the well-known environmentally relevant MDC bisphenol A. Decreased apolipoprotein Ea transcript levels indicated disrupted lipid transport, which was likely related to the observed dose-dependent increases in yolk size across all compounds. Increased yolk size and decreased swimming activity indicate decreased energy usage, which could lead to adverse outcomes because the availability of energy reserves is essential for embryo survival and growth. Exposure to T0070907 resulted in a darkened yolk. This was likely related to reduced transcript levels of genes involved in lipid transport and fatty acid oxidation, a combination of responses that was specific to exposure to this compound, possibly leading to lipid accumulation and cell death in the yolk. Paraoxonase 1 (Pon1) transcript levels were increased by rosiglitazone and T0070907, but this was not reflected in PON1 enzyme activities. The present study shows how exposure to MDCs can influence biochemical and molecular processes involved in early lipid metabolism and may lead to adverse outcomes in the earliest life stages of fish.

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Machine learning-based prediction of fish acute mortality: implementation, interpretation, and regulatory relevance
Authors
Gasser Lilian, Schür Christoph, Perez-Cruz Fernando, Schirmer Kristin, Baity-Jesi Marco
Journal
Environmental Science: Advances
Vol. 3
1124-1138
Keywords
Machine learning, Ecotoxicology, Fish, Hazard assessment, Chemical regulation
Date of publication
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Regulation of chemicals requires knowledge of their toxicological effects on a large number of species, which has traditionally been acquired through in vivo testing. The recent effort to find alternatives based on machine learning, however, has not focused on guaranteeing transparency, comparability and reproducibility, which makes it difficult to assess advantages and disadvantages of these methods. Also, comparable baseline performances are needed. In this study, we trained regression models on the ADORE “t-F2F” challenge proposed in [Schür et al., Nature Scientific data, 2023] to predict acute mortality, measured as LC50 (lethal concentration 50), of organic compounds on fishes. We trained LASSO, random forest (RF), XGBoost, Gaussian process (GP) regression models, and found a series of aspects that are stable across models: (i) using mass or molar concentrations does not affect performances; (ii) the performances are only weakly dependent on the molecular representations of the chemicals, but (iii) strongly on how the data is split. Overall, the tree-based models RF and XGBoost performed best and we were able to predict the log10-transformed LC50 with a root mean square error of 0.90, which corresponds to an order of magnitude on the original LC50 scale. On a local level, on the other hand, the models are not able to consistently predict the toxicity of individual chemicals accurately enough. Predictions for single chemicals are mostly influenced by a few chemical properties while taxonomic traits are not captured sufficiently by the models. We discuss technical and conceptual improvements for these challenges to enhance the suitability of in silico methods to environmental hazard assessment. Accordingly, this work showcases state-of-the-art models and contributes to the ongoing discussion on regulatory integration.

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How wastewater reflects human metabolism - Suspect screening of pharmaceutical metabolites in wastewater influent
Journal
Environmental Science & Technology
Vol. 58
No. 22
9828-9839
Keywords
Drug Metabolites, Human Pharmaceutical Metabolism, Suspect Screening, Wastewater, High Resolution Mass Spectrometry, Sirius/csi:fingerid, Metfrag, Molecular Network
Date of publication
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Pharmaceuticals and their human metabolites are contaminants of emerging concern in the aquatic environment. Most monitoring studies focus on a limited set of parent compounds and even fewer metabolites. However, more than 50% of the most consumed pharmaceuticals are excreted in higher amounts as metabolites than as parents, as confirmed by a literature analysis within this study. Hence, we applied a wide-scope suspect screening approach to identify human pharmaceutical metabolites in wastewater influent from three Swiss treatment plants. Based on consumption amounts and human metabolism data, a suspect list comprising 268 parent compounds and over 1500 metabolites was compiled. Online solid phase extraction combined with liquid chromatography coupled to high-resolution tandem mass spectrometry was used to analyze the samples. Data processing, annotation, and structure elucidation were achieved with various tools, including molecular networking as well as SIRIUS/CSI:FingerID and MetFrag for MS2 spectra rationalization. We confirmed 37 metabolites with reference standards and 16 by human liver S9 incubation experiments. More than 25 metabolites were detected for the first time in influent wastewater. Semiquantification with MS2Quant showed that metabolite to parent concentration ratios were generally lower compared to literature expectations, probably due to further metabolite transformation in the sewer system or limitations in the metabolite detection. Nonetheless, metabolites pose a large fraction to the total pharmaceutical contribution in wastewater, highlighting the need for metabolite inclusion in chemical risk assessment.

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Exploring BPA alternatives – Environmental levels and toxicity review
Authors
Adamovsky Ondrej, Groh Ksenia J., Białk-Bielińska Anna, Escher Beate I., Beaudouin R., Lagares Liadys Mora, Tollefsen Knut Erik, Fenske Martina, Mulkiewicz Ewa, Creusot Nicolas, Sosnowska Anita, Loureiro Susana, Beyer Jonny, Repetto Guillermo, Štern Alja, Lopes Isabel, Monteiro Marta, Zikova-Kloas Andrea, Eleršek Tina, Vračko Marjan, Kyriakopoulou Katerina, Zdybel Szymon, Puzyn Tomasz, Koczur Weronika, Morthorst Jane Ebsen, Holbech Henrik, Carlsson Gunnar, Örn Stefan, Herrero Óscar, Siddique Ayesha, Liess Matthias, Braun Georg, Srebny Vanessa, Žegura Bojana, Hinfray Nathalie, Brion François, Knapen Dries, Vandeputte Ellen, Stinckens Evelyn, Vergauwen Lucia, Behrendt Lars, Silva Maria João, Blaha Ludek
Journal
Environment International
Vol. 189
108728
Keywords
BPA alternatives, Biological activity, In silico, Invertebrates, Vertebrates
Date of publication
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Bisphenol A alternatives are manufactured as potentially less harmful substitutes of bisphenol A (BPA) that offer similar functionality. These alternatives are already in the market, entering the environment and thus raising ecological concerns. However, it can be expected that levels of BPA alternatives will dominate in the future, they are limited information on their environmental safety. The EU PARC project highlights BPA alternatives as priority chemicals and consolidates information on BPA alternatives, with a focus on environmental relevance and on the identification of the research gaps. The review highlighted aspects and future perspectives. In brief, an extension of environmental monitoring is crucial, extending it to cover BPA alternatives to track their levels and facilitate the timely implementation of mitigation measures. The biological activity has been studied for BPA alternatives, but in a non-systematic way and prioritized a limited number of chemicals. For several BPA alternatives, the data has already provided substantial evidence regarding their potential harm to the environment. We stress the importance of conducting more comprehensive assessments that go beyond the traditional reproductive studies and focus on overlooked relevant endpoints. Future research should also consider mixture effects, realistic environmental concentrations, and the long-term consequences on biota and ecosystems.

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Regulatory and practical considerations on the implementation of a mixture allocation factor in REACH
Authors
Hassold Enken, Schulze Jona , Galert Wiebke, Treu Gabriele
Journal
Environmental Sciences Europe
Vol. 36
101
Keywords
Co-exposure, Mixture risk assessment, Risk management measures, Unintentional mixtures, MAF
Date of publication
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There is indisputable evidence that the environment, humans and wildlife are continuously exposed not to single but to multiple chemicals from diferent sources. Exposure to these mixtures can lead to combined risks not yet suffciently addressed in any of the European chemical legislations. Under the REACH regulation for industrial chemicals, specifc environmental mixture assessments are challenged by a lack of data on toxicity, use and exposures and the communication of data along the supply chain. Within the Chemicals Strategy for Sustainability the European Commission proposed to introduce (a) mixture allocation factor(s) (MAF) as regulatory management tool to reduce exposures, efects and potential risks of unintentional mixtures. The MAF is proposed to be applied as default value within the chemical safety assessments undertaken by companies under REACH. Here, we critically review the relevant literature discussing the conceptual background of the MAF and approaches to derive its magnitude.
The analysis focuses on the environment and key issues for an implementation in regulatory practise together with remaining uncertainties and needs for possible ways forward. At this stage introducing a MAF in REACH Annex I appears the most pragmatic and immediately implementable measure to address risks from unintentional mixtures in the environment. A so-called MAFceiling appears as the preferred option of policy makers, since it would only afect relevant substances close to their respective risk threshold. While the magnitude of a MAF will be decided politically, the choice of methods and assumptions to derive its size should be clear and transparent, build on the available scientifc evidence and take account for uncertainties. A MAF will be most efective reducing environmental releases and exposure levels if risk mitigation measures are implemented in practise. Its socioeconomic impacts and costs need to be assessed in a balanced way together with the benefts for the environment, society, and for companies — also in comparison to the eforts needed for specifc mixture risk assessments. In the future and with the experiences gathered in practise, a discussion is needed on how to assess and regulate unintentional mixtures across diferent pieces of chemicals legislation to consider the true exposure situation and ensure harmonisation.

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Two-stage machine learning-based approach to predict points of departure for human noncancer and developmental/reproductive effects
Authors
Kvasnicka Jacob, Aurisano Nicolo, von Borries Kerstin, lU En-Hsuan, Fantke Peter, Jolliet Olivier, Wright Fred A., Chiu Weihsueh A.
Journal
Environmental Science & Technology
Vol. 58
No. 35
15638−15649
Keywords
QSAR model, Toxicity prediction, Chemical risk assessment, High-throughput screening, Life cycle impact assessment (LCIA)
Date of publication
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Chemical points of departure (PODs) for critical health effects are crucial for evaluating and managing human health risks and impacts from exposure. However, PODs are unavailable for most chemicals in commerce due to a lack of in vivo toxicity data. We therefore developed a two-stage machine learning (ML) framework to predict human-equivalent PODs for oral exposure to organic chemicals based on chemical structure. Utilizing ML-based predictions for structural/physical/chemical/toxicological properties from OPERA 2.9 as features (Stage 1), ML models using random forest regression were trained with human-equivalent PODs derived from in vivo data sets for general noncancer effects (n = 1,791) and reproductive/developmental effects (n = 2,228), with robust cross-validation for feature selection and estimating generalization errors (Stage 2). These two-stage models accurately predicted PODs for both effect categories with cross-validation-based root-mean-squared errors less than an order of magnitude. We then applied one or both models to 34,046 chemicals expected to be in the environment, revealing several thousand chemicals of moderate concern and several hundred chemicals of high concern for health effects at estimated median population exposure levels. Further application can expand by orders of magnitude the coverage of organic chemicals that can be evaluated for their human health risks and impacts.

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Protocol: Testing the performance of INVITES-IN, A tool for assessing the internal validity of in vitro studies
Authors
Mathisen Gro Haarklou, Vist Gunn E, Whaley Paul, White Richard A, Husøy Trine, Ames Heather M, Beronius Anna, Di Consiglio Emma, Druwe Ingrid, Hartung Thomas, Hoffmann Sebastian, Hooijmans Carlijn R., Machera Kyriaki, Prieto Pilar, Robin Joshua F, Roggen Erwin, Rooney Andrew A, Roth Nicolas, Spilioti Eliana, Spyropoulou Anastasia, Tcheremenskaia Olga, Testai Emanuela, Vinken Mathieu, Svendsen Camilla
Journal
Evidence-Based Toxicology
Vol. 1
No. 1
2293289
Keywords
Cell culture, Evidence-based toxicology, Risk of bias, User testing
Date of publication
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A tool for evaluation of internal validity of in vitro studies called INVITES-IN is currently under development. The tool is designed specifically for cell culture studies.

This protocol describes the testing of the performance of INVITES-IN. By performance, we mean the extent to which results of using INVITES-IN are the same for different users (consistency), the amount of time and cognitive effort it takes to apply INVITES-IN (assessor workload), the precision and potential for systematic error in results of applying INVITES-IN (accuracy), and how easy it is to use INVITES-IN (user experience).

The participants in the user testing will be representative for the expected end-users of INVITES-IN which are persons preparing literature reviews including in vitro studies (e.g. in the context of chemical hazard and risk assessments or drug development). All end-users are expected to have experience with in vitro methods.

Data collected from the performance testing will be used for further refinement and development of the release version of INVITES-IN.

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The integrated stress response-related expression of CHOP due to mitochondrial toxicity is a warning sign for DILI liability
Authors
Vlasveld Matthijs, Callegaro Giulia, Fisher Ciarán, Eakins Julie, Walker Paul, Lok Samantha, van Oost Siddh, de Jong Brechtje, Pellegrino-Coppola Damiano, Burger Gerhard, Wink Steven, van de Water Bob
Journal
Liver international
Vol. 44
No. 3
760-775
Keywords
CHOP, Drug-induced liver injury, High-throughput screening, Integrated stress response, Mitochondrial toxicity
Date of publication
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Background and Aims: Drug-induced liver injury (DILI) is one of the most frequentreasons for failure of drugs in clinical trials or market withdrawal. Early assessmentof DILI risk remains a major challenge during drug development. Here, we presenta mechanism-based weight-of-evidence approach able to identify certain candidatecompounds with DILI liabilities due to mitochondrial toxicity.

Methods: A total of 1587 FDA-approved drugs and 378 kinase inhibitors werescreened for cellular stress response activation associated with DILI using an imaging-based HepG2 BAC-GFP reporter platform including the integrated stress response(CHOP), DNA damage response (P21) and oxidative stress response (SRXN1).

Results: In total 389, 219 and 104 drugs were able to induce CHOP-GFP, P21-GFP andSRXN1-GFP expression at 50 μM respectively. Concentration response analysis iden-tified 154 FDA-approved drugs as critical CHOP-GFP inducers. Based on predictedand observed (pre-)clinical DILI liabilities of these drugs, nine antimycotic drugs (e.g.butoconazole, miconazole, tioconazole) and 13 central nervous system (CNS) agents(e.g. duloxetine, fluoxetine) were selected for transcriptomic evaluation using whole-genome RNA-sequencing of primary human hepatocytes. Gene network analysis un-covered mitochondrial processes, NRF2 signalling and xenobiotic metabolism as mostaffected by the antimycotic drugs and CNS agents. Both the selected antimycoticsand CNS agents caused impairment of mitochondrial oxygen consumption in bothHepG2 and primary human hepatocytes.

Conclusions: Together, the results suggest that early pre- clinical screening for CHOPexpression could indicate liability of mitochondrial toxicity in the context of DILI, and,therefore, could serve as an important warning signal to consider during decision-making in drug development.

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Physiologically based kinetic (PBK) modeling as a new approach methodology (NAM) for predicting systemic levels of gut microbial metabolites
Journal
Toxicology Letters
Vol. 396
94-102
Keywords
Kinetic modeling, New approach methodologies, Gut microbial metabolism, Ex vivo/in vitro models, Gut microbiome
Date of publication
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There is a clear need to develop new approach methodologies (NAMs) that combine in vitro and in silico testing to reduce and replace animal use in chemical risk assessment. Physiologically based kinetic (PBK) models are gaining popularity as NAMs in toxico/pharmacokinetics, but their coverage of complex metabolic pathways occurring in the gut are incomplete. Chemical modification of xenobiotics by the gut microbiome plays a critical role in the host response, for example, by prolonging exposure to harmful metabolites, but there is not a comprehensive approach to quantify this impact on human health. There are examples of PBK models that have implemented gut microbial biotransformation of xenobiotics with the gut as a dedicated metabolic compartment. However, the integration of microbial metabolism and parameterization of PBK models is not standardized and has only been applied to a few chemical transformations. A challenge in this area is the measurement of microbial metabolic kinetics, for which different fermentation approaches are used. Without a standardized method to measure gut microbial metabolism ex vivo/in vitro, the kinetic constants obtained will lead to conflicting conclusions drawn from model predictions. Nevertheless, there are specific cases where PBK models accurately predict systemic concentrations of gut microbial metabolites, offering potential solutions to the challenges outlined above. This review focuses on models that integrate gut microbial bioconversions and use ex vivo/in vitro methods to quantify metabolic constants that accurately represent in vivo conditions.

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New approach methods to assess developmental and adult neurotoxicity for regulatory use: a PARC work package 5 project
Authors
Tal Tamara, Myhre Oddvar, Fritsche Ellen, Rüegg Joëlle, Craenen Kai, Aiello-Holden Kiara, Agrillo Caroline, Babin Patrick J., Escher Beate I., Dirven Hubert, Hellsten Kati, Dolva Kristine, Hessel Ellen, Heusinkveld Harm J., Hadzhiev Yavor, Hurem Selma, Jagiello Karolina, Judzinska Beata, Klüver Nils, Knoll-Gellida Anja, Kühne Britta A., Leist Marcel, Lislien Malene, Lyche Jan L., Müller Ferenc, Colbourne John K., Neuhaus Winfried, Pallocca Giorgia, Seeger Bettina, Scharkin Ilka, Scholz Stefan, Spjuth Ola, Torres-Ruiz Monica, Bartmann Kristina
Journal
Frontiers in Toxicology
Vol. 6
1359507
Keywords
Developmental neurotoxicity (DNT), New approach method (NAM), Adult neurotoxicity (ANT), DNT-IVB, Applicability domain
Date of publication
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In the European regulatory context, rodent in vivo studies are the predominant source of neurotoxicity information. Although they form a cornerstone of neurotoxicological assessments, they are costly and the topic of ethical debate. While the public expects chemicals and products to be safe for the developing and mature nervous systems, considerable numbers of chemicals in commerce have not, or only to a limited extent, been assessed for their potential to cause neurotoxicity. As such, there is a societal push toward the replacement of animal models with in vitro or alternative methods. New approach methods (NAMs) can contribute to the regulatory knowledge base, increase chemical safety, and modernize chemical hazard and risk assessment. Provided they reach an acceptable level of regulatory relevance and reliability, NAMs may be considered as replacements for specific in vivo studies. The European Partnership for the Assessment of Risks from Chemicals (PARC) addresses challenges to the development and implementation of NAMs in chemical risk assessment. In collaboration with regulatory agencies, Project 5.2.1e (Neurotoxicity) aims to develop and evaluate NAMs for developmental neurotoxicity (DNT) and adult neurotoxicity (ANT) and to understand the applicability domain of specific NAMs for the detection of endocrine disruption and epigenetic perturbation. To speed up assay time and reduce costs, we identify early indicators of later-onset effects. Ultimately, we will assemble second-generation developmental neurotoxicity and first-generation adult neurotoxicity test batteries, both of which aim to provide regulatory hazard and risk assessors and industry stakeholders with robust, speedy, lower-cost, and informative next-generation hazard and risk assessment tools.

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Single and mixture effects of bisphenol A and benzophenone-3 on in vitro T helper cell differentiation
Authors
Fischer Florence, Ermer Miriam Rebecca, Howanski Julia, Yin Ziran, Bauer Mario, Wagner Marita, Fink Beate, Zenclussen Ana C., Schumacher Anne
Journal
Chemico-Biological Interactions
Vol. 395
111011
Keywords
TH17 cell, Regulatory T cell, In vitro differentiation, Endocrine disruptor, Bisphenol A, Benzophenone-3, Chemical mixture
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Immune homeostasis is key to guarantee that the immune system can elicit effector functions against pathogens and at the same time raise tolerance towards other antigens. A disturbance of this delicate balance may underlie or at least trigger pathologies. Endocrine disrupting chemicals (EDCs) are increasingly recognized as risk factors for immune dysregulation. However, the immunotoxic potential of specific EDCs and their mixtures is still poorly understood. Thus, we aimed to investigate the effect of bisphenol A (BPA) and benzophenone-3 (BP-3), alone and in combination, on in vitro differentiation of T helper (TH)17 cells and regulatory T (Treg) cells.
Naïve T cells were isolated from mouse lymphoid tissues and differentiated into the respective TH population in the presence of 0.001–10 μM BP-3 and/or 0.01–100 μM BPA. Cell viability, proliferation and the expression of TH lineage specific transcription factors and cytokines was measured by flow cytometry and CBA/ELISA. Moreover, the transcription of hormone receptors as direct targets of EDCs was quantified by RT-PCR.
We found that the highest BPA concentration adversely affected TH cell viability and proliferation. Moreover, the general differentiation potential of both TH populations was not altered in the presence of both EDCs. However, EDC exposure modulated the emergence of TH17 and Treg cell intermediate states. While BPA and BP-3 promoted the development of TH1-like TH17 cells under TH17-differentiating conditions, TH2-like Treg cells occurred under Treg polarization. Interestingly, differential effects could be observed in mixtures of the two tested compounds compared with the individual compounds. Notably, estrogen receptor β expression was decreased under TH17-differentiating conditions in the presence of BPA and BP-3 as mixture. In conclusion, our study provides solid evidence for both, the immune disruptive potential and the existence of cumulative effects of real nature EDC mixtures on T cell in vitro differentiation.
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Metabolomics in human SGBS cells as new approach method for studying adipogenic effects: Analysis of the effects of DINCH and MINCH on central carbon metabolism
Authors
Goerdeler Cornelius, Engelmann Beatrice, Aldehoff Alix Sarah, Schaffert Alexandra, Blüher Matthias, Heiker John T., Wabitsch Martin, Schubert Kristin, Rolle-Kampczyk Ulrike, von Bergen Martin
Journal
Environmental Research
Vol. 252
118847
Keywords
LOD, MDC, Metabolism-disrupting chemical, PPARA, Peroxisome proliferator-activated receptor alpha, PPARG, Peroxisome proliferator-activated receptor gamma, PPP, TCA, Tricarboxylic acid, TZD, Thiazolidinedione
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Growing evidence suggests that exposure to certain metabolism-disrupting chemicals (MDCs), such as the phthalate plasticizer DEHP, might promote obesity in humans, contributing to the spread of this global health problem. Due to the restriction on the use of phthalates, there has been a shift to safer declared substitutes, including the plasticizer diisononyl-cyclohexane-1,2-dicarboxylate (DINCH). Notwithstanding, recent studies suggest that the primary metabolite monoisononyl-cyclohexane-1,2-dicarboxylic acid ester (MINCH), induces differentiation of human adipocytes and affects enzyme levels of key metabolic pathways. Given the lack of methods for assessing metabolism-disrupting effects of chemicals on adipose tissue, we used metabolomics to analyze human SGSB cells exposed to DINCH or MINCH. Concentration analysis of DINCH and MINCH revealed that uptake of MINCH in preadipocytes was associated with increased lipid accumulation during adipogenesis. Although we also observed intracellular uptake for DINCH, the solubility of DINCH in cell culture medium was limited, hampering the analysis of possible effects in the μM concentration range. Metabolomics revealed that MINCH induces lipid accumulation similar to peroxisome proliferator-activated receptor gamma (PPARG)-agonist rosiglitazone through upregulation of the pyruvate cycle, which was recently identified as a key driver of de novo lipogenesis. Analysis of the metabolome in the presence of the PPARG-inhibitor GW9662 indicated that the effect of MINCH on metabolism was mediated at least partly by a PPARG-independent mechanism. However, all effects of MINCH were only observed at high concentrations of 10 μM, which are three orders of magnitudes higher than the current concentrations of plasticizers in human serum. Overall, the assessment of the effects of DINCH and MINCH on SGBS cells by metabolomics revealed no adipogenic potential at physiologically relevant concentrations. This finding aligns with previous in vivo studies and supports the potential of our method as a New Approach Method (NAM) for the assessment of adipogenic effects of environmental chemicals.

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Estimating the dynamic early life exposure to PFOA and PFOS of the HELIX children: Emerging profiles via prenatal exposure, breastfeeding, and diet
Authors
Ratier Aude, Casas Maribel, Grazuleviciene Regina, Slama Rémy, Haug Line Småstuen, Thomsen Cathrine, Vafeiadi Marina, Wright John, Zeman Florence A, Vrijheid Martine, Brochot Céline
Journal
Environment International
Vol. 186
108621
Keywords
PBPK model, Reverse dosimetry, Longitudinal cohorts, Children, Human biomonitoring
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In utero and children’s exposure to per- and polyfluoroalkyl substances (PFAS) is a major concern in health risk assessment as early life exposures are suspected to induce adverse health effects. Our work aims to estimate children’s exposure (from birth to 12 years old) to PFOA and PFOS, using a Physiologically-Based Pharmacokinetic (PBPK) modelling approach. A model for PFAS was updated to simulate the internal PFAS exposures during the in utero life and childhood, and including individual characteristics and exposure scenarios (e.g., duration of breastfeeding, weight at birth, etc.). Our approach was applied to the HELIX cohort, involving 1,239 mother–child pairs with measured PFOA and PFOS plasma concentrations at two sampling times: maternal and child plasma concentrations (6 to 12 y.o). Our model predicted an increase in plasma concentrations during fetal development and childhood until 2 y.o when the maximum concentrations were reached. Higher plasma concentrations of PFOA than PFOS were predicted until 2 y.o, and then PFOS concentrations gradually became higher than PFOA concentrations. From 2 to 8 y.o, mean concentrations decreased from 3.1 to 1.88 µg/L or ng/mL (PFOA) and from 4.77 to 3.56 µg/L (PFOS). The concentration–time profiles vary with the age and were mostly influenced by in utero exposure (on the first 4 months after birth), breastfeeding (from 5 months to 2 (PFOA) or 5 (PFOS) y.o of the children), and food intake (after 3 (PFOA) or 6 (PFOS) y.o of the children). Similar measured biomarker levels can correspond to large differences in the simulated internal exposures, highlighting the importance to investigate the children’s exposure over the early life to improve exposure classification. Our approach demonstrates the possibility to simulate individual internal exposures using PBPK models when measured biomarkers are scarce, helping risk assessors in gaining insight into internal exposure during critical windows, such as early life.

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Inconsistencies in the EU regulatory risk assessment of PFAS call for readjustment
Authors
Reinikainen Jussi, Bouhoulle Elodie, Sorvari Jaana
Journal
Environment International
Vol. 186
108614
Keywords
PFAS, Risk assessment, Health protection, Contamination, Quality standard, Policy
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Recognition of per- and polyfluoroalkyl substances (PFAS) as widespread environmental pollutants and a consequent risk to human health, has recently made the European Union (EU) adopt several regulatory measures for their management. The coherence of these measures is challenged by the diversity and the ubiquitous occurrence of PFAS, which also complicates the EU’s endeavor to advance justified, harmonized, and transparent approaches in the regulatory assessment of chemical risks. Our study critically reviews the European approach for the risk assessment of PFAS, by applying a comparative analysis of the current and pending regulatory thresholds issued for these chemicals in water bodies, drinking water, and certain foodstuffs. Our study shows that the level of health protection embedded in the studied thresholds may differ by three orders of magnitude, even in similar exposure settings. This is likely to confuse the common understanding of the toxicity and health risks of PFAS and undermine reasonable decision-making and the equal treatment of different stakeholders. Wealso indicate that currently, no consensus exists on the appropriate level of required health protection regarding PFAS and that the recently adopted tolerable intake value in the EU is too cautious. Based on our analysis, we propose some simple solutions on how the studied regulations and their implicit PFAS thresholds or their application could be improved. We further conclude that instead of setting EU-wide PFAS thresholds for all the environmental compartments, providing the member states with the flexibility to consider case-specific factors such as regional background concentrations or food consumption rates, in their national regulatory procedures would likely result in more sustainable management of environmental PFAS without compromising the scientific foundation of risk assessment, the legitimacy of the EU policy framework and public health.

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Exposure to benzotriazoles and benzothiazoles in Czech male population and its associations with biomarkers of liver function, serum lipids and oxidative stress
Authors
Pálešová Nina, Bláhová Lucie, Janoš Tomáš, Řiháčková Katarína, Pindur Aleš, Šebejová Ludmila, Čupr Pavel
Journal
International Archives of Occupational and Environmental Health
Vol. 97
523–536
Keywords
Benzotriazole, Human biomonitoring, Liver Function, Serum lipids, Oxidative stress
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Introduction: Benzotriazoles and benzothiazoles (BTs) are high-production volume chemicals as well as widely distributed
emerging pollutants with potential health risk. However, information about human exposure to BTs and associated health
outcomes is limited.
Objective: We aimed to characterise exposure to BTs among Czech men, including possible occupational exposure among
firefighters, its predictors, and its associations with liver function, serum lipids and oxidative stress.
Methods: 165 participants (including 110 firefighters) provided urine and blood samples that were used to quantify the urinary
levels of 8 BTs (high-performance liquid chromatography-tandem mass spectrometry), and 4 liver enzymes, cholesterol,
low-density lipoprotein, and 8-hydroxy-2’-deoxyguanosine. Linear regression was used to assess associations with population
characteristics and biomarkers of liver function, serum lipids and oxidative stress. Regression models were adjusted for
potential confounding variables and false discovery rate procedure was applied to account for multiplicity.
Results: The BTs ranged from undetected up to 46.8 ng/mL. 2-hydroxy-benzothiazole was the most predominant compound
(detection frequency 83%; median 1.95 ng/mL). 1-methyl-benzotriazole (1M-BTR) was measured in human samples for
the first time, with a detection frequency 77% and median 1.75 ng/mL. Professional firefighters had lower urinary 1M-BTR
compared to non-firefighters. Urinary 1M-BTR was associated with levels of γ-glutamyl transferase (β = − 17.54%; 95%
CI: − 26.127, − 7.962).
Conclusion: This is the first study to investigate BT exposure in Central Europe, including potentially exposed firefighters.
The findings showed a high prevalence of BTs in the study population, the relevance of 1M-BTR as a new biomarker of
exposure, and an urgent need for further research into associated adverse health outcomes.

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AOPWIKI-EXPLORER: An interactive graph-based query engine leveraging large language models
Authors
Kumar Saurav, Deepika Deepika, Slater Karin, Kumar Vikas
Journal
Computational Toxicology
Vol. 30
100308
Keywords
Adverse outcome pathway, Large language model, Graph database, Risk assessment, Artificial intelligence, Data integration, Information retrieval, Information extraction
Date of publication
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Adverse Outcome Pathways (AOPs) provide a basis for non-animal testing, by outlining the cascade of molecular and cellular events initiated upon stressor exposure, leading to adverse effects. In recent years, the scientific community has shown interest in developing AOPs through crowdsourcing, with the results archived in the AOP-Wiki: a centralized repository coordinated by the OECD, hosting nearly 512 AOPs (April, 2023). However, the AOP-Wiki platform currently lacks a versatile querying system, which hinders developers’ exploration of the AOP network and impedes its practical use in risk assessment. This work proposes to unleash the full potential of the AOP-Wiki archive by adapting its data into a Labelled Property Graph (LPG) schema. Additionally, the tool offers a visual network query interface for both database-specific and natural language queries, facilitating the retrieval and analysis of graph data. The multi-query interface allows non-technical users to construct flexible queries, thereby enhancing the potential for AOP exploration. By reducing the time and technical requirements, the present query engine enhances the practical utilization of the valuable data within AOP-Wiki. To evaluate the platform, a case study is presented with three levels of use-case scenarios (simple, moderate, and complex queries). AOPWIKI- EXPLORER is freely available on GitHub (https://github.com/Crispae/AOPWiki_Explorer) for wider community reach and further enhancement.

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Water quality monitoring with the multiplexed assay MitoOxTox for mitochondrial toxicity, oxidative stress response and cytotoxicity in AREc32 cells
Journal
Environmental Science and Technology
Vol. 58
No. 13
5716−5726
Keywords
Mitochondrial membrane potential, Mitochondrial toxicity, Oxidative stress, Environmental monitoring, Mixture, AREc32
Date of publication
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Mitochondria play a key role in energy production of cells, but their function can be disturbed by environmental toxicants. We developed a cell-based mitochondrial toxicity assay for environmental chemicals and their mixtures extracted from water samples. The reporter gene cell line AREc32, which is frequently used to quantify the cytotoxicity and oxidative stress response of water samples, was multiplexed with an endpoint of mitochondrial toxicity. The disruption of the mitochondrial membrane potential (MMP) was quantified by high-content imaging and compared to measured cytotoxicity, predicted baseline toxicity, and activation of oxidative stress response. Mitochondrial complex I inhibitors showed highly specific effects on the MMP with minor effects on cell viability. Uncouplers showed wide distribution of specificity on the MMP often accompanied by specific cytotoxicity (enhanced over baseline toxicity). Mitochondrial toxicity and oxidative stress response were not directly associated. The multiplexed assay was applied to water samples ranging from wastewater treatment plant (WWTP) influent and effluent, surface water, to drinking and bottled water from various European countries. Specific effects on MMP were observed for WWTP influent and effluent. This new MitoOxTox assay is an important complement for existing in vitro test batteries for water quality testing and has potential for application in human biomonitoring.

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Innovative analytical methodologies for characterizing chemical exposure with a view to next-generation risk assessment
Authors
Tkalec Žiga, Antignac Jean-Philippe, Bandow Nicole, Béen Frederic M., Belova Lidia, Bessems Jos, Le Bizec Bruno, Brack Werner, Cano-Sancho German, Chaker Jade, Covaci Adrian, Creusot Nicolas, David Arthur, Debrauwer Laurent, Dervilly Gaud, Duca Radu - Corneliu, Fessard Valerie, Grimalt Joan, Guerin Thierry, Habchi Baninia, Hecht Helge, Hollender Juliane, Jamin Emilien L., Klanova Jana, Kosjek Tina, Krauss Martin, Lamoree Marja, Lavison-Bompard Gwenaelle, Meijer Jeroen, Moeller Ruth, Mol Hans, Mompelat Sophie, Van Nieuwenhuyse An, Oberacher Herbert, Parinet Julien, Van Poucke Christof, Roškar Robert, Togola Anne, Trontelj Jurij, Price Elliott
Journal
Environment International
Vol. 186
108585
Keywords
High-resolution mass spectrometry, Effect-based methods, Sampling strategies, Chemical exposure, Chemical risk assessment , Effect-directed analysis
Date of publication
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The chemical burden on the environment and human population is increasing. Consequently, regulatory risk assessment must keep pace to manage, reduce, and prevent adverse impacts on human and environmental health associated with hazardous chemicals. Surveillance of chemicals of known, emerging, or potential future concern, entering the environment-food-human continuum is needed to document the reality of risks posed by chemicals on ecosystem and human health from a one health perspective, feed into early warning systems and support public policies for exposure mitigation provisions and safe and sustainable by design strategies. The use of less-conventional sampling strategies and integration of full-scan, high-resolution mass spectrometry and effect-directed analysis in environmental and human monitoring programmes have the potential to enhance the screening and identification of a wider range of chemicals of known, emerging or potential future concern. Here, we outline the key needs and recommendations identified within the European Partnership for Assessment of Risks from Chemicals (PARC) project for leveraging these innovative methodologies to support the development of next-generation chemical risk assessment.

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Intuitive toxicology in the 21st century - Bridging the perspectives of the public and risk assessors in Europe
Journal
Risk Analysis
Vol. 44
No. 10
2348-2359
Keywords
Chemical risk assessment, intuitive toxicology, New approach methodologies, next-generation riskassessment, risk perception
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Three decades ago, several articles on the subjectivity in chemical risk judgments (i.e., labeled “intuitive toxicology”) measured the divide between the public and toxicologists with different backgrounds regarding the validity of predicting health effects based on in vivo studies. Similar divides with impacts on societal discourse and chemical risk assessment practices might exist concerning alternative toxicity testing methods (i.e., in vitro and in silico). However, studies to date have focused either on the public's views of in vivo or stem cell testing or on experts’ views of in vivo testing and potential alternatives (i.e., toxicologists and medical students), which do not allow for a direct investigation of potential divides. To fill this knowledge gap, we conducted two online surveys, involving members of the German-speaking public in Switzerland and European human health risk assessors, respectively. This article presents the results of these two surveys regarding the divide in the public's and risk assessors’ perspectives on risk assessment based on in vivo, in vitro, and in silico testing. Particularly, the survey with the risk assessors highlights that, beyond scientific and regulatory barriers, alternatives to in vivo testing may encounter individual hurdles, such as higher uncertainty associated with them. Understanding and addressing these hurdles will be crucial to facilitate the integration of new approach methodologies into chemical risk assessment practices as well as a successful transition toward next-generation risk assessment, bringing us closer to a fit-for-purpose and more efficient regulatory landscape.

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Comprehensive mapping of the AOP-Wiki database: identifying biological and disease gaps
Authors
Jaylet Thomas, Coustillet Thibaut, Smith Nicola M., Viviani Barbara, Lindeman Birgitte, Vergauwen Lucia, Myhre Oddvar, Yarar Nurettin, Gostner Johanna M., Monfort-Lanzas Pablo, Jornod Florence, Holbech Henrik, Coumoul Xavier, Sarigiannis Dimosthenis A., Antczak Philipp, Bal-Price Anna, Fritsche Ellen, Kuchovska Eliska, Stratidakis Antonios, Barouki Robert, Kim Min Ji, Taboureau Olivier, Wojewodzic Marcin, Knapen Dries, Audouze Karine
Journal
Frontiers in Toxicology
Vol. 6
1285768
Keywords
Adverse outcome pathway, AOP network, Immunotoxicity, Neurotoxicity, Nongenotoxic carcinogenesis, Diseases, PARC
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Introduction: The Adverse Outcome Pathway (AOP) concept facilitates rapid hazard assessment for human health risks. AOPs are constantly evolving, their number is growing, and they are referenced in the AOP-Wiki database, which is supported by the OECD. Here, we present a study that aims at identifying well-defined biological areas, as well as gaps within the AOP-Wiki for future research needs. It does not intend to provide a systematic and comprehensive summary of the available literature on AOPs but summarizes and maps biological knowledge and diseases represented by the already developed AOPs (with OECD endorsed status or under validation).

Methods: Knowledge from the AOP-Wiki database were extracted and prepared for analysis using a multi-step procedure. An automatic mapping of the existing information on AOPs (i.e., genes/proteins and diseases) was performed using bioinformatics tools (i.e., overrepresentation analysis using Gene Ontology and DisGeNET), allowing both the classification of AOPs and the development of AOP networks (AOPN).

Results: AOPs related to diseases of the genitourinary system, neoplasms and developmental anomalies are the most frequently investigated on the AOP-Wiki. An evaluation of the three priority cases (i.e., immunotoxicity and non-genotoxic carcinogenesis, endocrine and metabolic disruption, and developmental and adult neurotoxicity) of the EU-funded PARC project (Partnership for the Risk Assessment of Chemicals) are presented. These were used to highlight under- and over-represented adverse outcomes and to identify and prioritize gaps for further research.

Discussion: These results contribute to a more comprehensive understanding of the adverse effects associated with the molecular events in AOPs, and aid in refining risk assessment for stressors and mitigation strategies. Moreover, the FAIRness (i.e., data which meets principles of findability, accessibility, interoperability, and reusability (FAIR)) of the AOPs appears to be an important consideration for further development.

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Revealing the cascade of pesticide effects from gene to community
Authors
Siddique Ayesha, Shahid Naeem, Liess Matthias
Journal
Science of the Total Environment
Vol. 917
170472
Keywords
Adaptation, Neonicotinoids, Genetic diversity, AFLP, G. pulex
Date of publication
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Global pesticide exposure in agriculture leads to biodiversity loss, even at ultra-low concentrations below the legal limits. The mechanisms by which the effects of toxicants act at such low concentrations are still unclear, particularly in relation to their propagation across the different biological levels. In this study, we demonstrate, for the first time, a cascade of effects from the gene to the community level. At the gene level, agricultural pesticide exposure resulted in reduced genetic diversity of field-collected Gammarus pulex, a dominant freshwater crustacean in Europe. Additionally, we identified alleles associated with adaptations to pesticide contamination. At the individual level, this genetic adaptation to pesticides was linked to a lower fecundity, indicating related fitness costs. At the community level, the combined effect of pesticides and competitors caused a decline in the overall number and abundance of pesticides susceptible macroinvertebrate competing with gammarids. The resulting reduction in interspecific competition provided an advantage for pesticide-adapted G. pulex to dominate macroinvertebrate communities in contaminated areas, despite their reduced fitness due to adaptation. These processes demonstrate the complex cascade of effects, and also illustrate the resilience and adaptability of biological systems across organisational levels to meet the challenges of a changing environment. 

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Making food systems more resilient to food safety risks by including artificial intelligence, big data, and internet of things into food safety early warning and emerging risk identification tools
Authors
Mu Wenjuan, Kleter Gijs A., Bouzembrak Yamine, Dupouy Eleonora, Frewer Lynn J., Al Natour Fadi Naser Radwan, Marvin H. J. P.
Journal
Comprehensive Reviews in Food Science and Food Safety
Vol. 23
No. 1
e13296
Keywords
Data sharing, Digital tools, Machine learning, Proactive system, Risk prediction
Date of publication
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To enhance the resilience of food systems to food safety risks, it is vitally important for national authorities and international organizations to be able to identify emerging food safety risks and to provide early warning signals in a timely manner. This review provides an overview of existing and experimental applications of artificial intelligence (AI), big data, and internet of things as part of early warning and emerging risk identification tools and methods in the food safety domain. There is an ongoing rapid development of systems fed by numerous, real-time, and diverse data with the aim of early warning and identification of emerging food safety risks. The suitability of big data and AI to support such systems is illustrated by two cases in which climate change drives the emergence of risks, namely, harmful algal blooms affecting seafood and fungal growth and mycotoxin formation in crops. Automation and machine learning are crucial for the development of future real-time food safety risk early warning systems. Although these developments increase the feasibility and effectiveness of prospective early warning and emerging risk identification tools, their implementation may prove challenging, particularly for low- andmiddle-income countries due to low connectivity and data availability. It is advocated to overcome these challenges by improving the capability and capacity of national authorities, as well as by enhancing their collaboration with the private sectorand international organizations.

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A systems toxicology approach for identification of disruptions in cholesterol homeostasis after aggregated exposure to mixtures of perfluorinated compounds in humans
Journal
Toxicological Sciences
Vol. 198
No. 2
191–209
Keywords
Exposure, PFAS, PBK model, Cholesterol biokinetic model, Systems toxicology
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Per- and polyfluoroalkyl substances (PFAS) are used in various household and industrial products. In humans, positive associations were reported between PFAS, including perfluorsulfonic acid and perfluorooctanoic acid, and cholesterol, a cardiometabolic risk factor. Animal studies show the opposite. Human-centered approaches are needed to better understand the effects of PFAS mixtures on cholesterol. Here, a systems toxicology approach is described, using a gene-centered cholesterol biokinetic model. PFAS exposure-gene expression relations from published data were introduced into the model. An existing PFAS physiologically based kinetic model was augmented with lung and dermal compartments and integrated with the cholesterol model to enable exposure-effect modeling. The final model was populated with data reflecting lifetime mixture exposure from: tolerable weekly intake values; the environment; high occupational exposures (ski waxing, PFAS industry). Results indicate that low level exposures (tolerable weekly intake, environmental) did not change cholesterol. In contrast, occupational exposures clearly resulted in internal PFAS exposure and disruption of cholesterol homeostasis, largely in line with epidemiological observations. Despite model limitations (eg, dynamic range, directionality), changes in cholesterol homeostasis were predicted for ski waxers, hitherto unknown from epidemiological studies. Here, future studies involving lipid metabolism could improve risk assessment.

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Brain-derived neurotrophic factor (BDNF): an effect biomarker of neurodevelopment in human biomonitoring programs
Authors
Rodriguez-Carrillo Andrea, Verheyen Veerle, van Nuijs Alexander, Fernández Mariana F, Remy Sylvie
Journal
Frontiers in Toxicology
Vol. 5
1319788
Keywords
Brain-derived neurotrophic factor, Neurodevelopment, Human biomonitoring, Effect biomarkers, Endocrine disruptors, Neurodevelopmental toxicity
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The present narrative review summarizes recent findings focusing on the role of brain-derived neurotrophic factor (BDNF) as a biomarker of effect for neurodevelopmental alterations during adolescence, based on health effects of exposure to environmental chemical pollutants. To this end, information was gathered from the PubMed database and the results obtained in the European project Human Biomonitoring for Europe (HBM4EU), in which BDNF was measured at two levels of biological organization: total BDNF protein (serum) and BDNF gene DNA methylation (whole blood) levels. The obtained information is organized as follows. First, human biomonitoring, biomarkers of effect and the current state of the art on neurodevelopmental alterations in the population are presented. Second, BDNF secretion and mechanisms of action are briefly explained. Third, previous studies using BDNF as an effect biomarker were consulted in PubMed database and summarized. Finally, the impact of bisphenol A (BPA), metals, and non-persistent pesticide metabolites on BDNF secretion patterns and its mediation role with behavioral outcomes are addressed and discussed. These findings were obtained from three pilot studies conducted in HBM4EU project. Published findings suggested that exposure to some chemical pollutants such as fine particle matter (PM), PFAS, heavy metals, bisphenols, and non-persistent pesticides may alter circulating BDNF levels in healthy population. Therefore, BDNF could be used as a valuable effect biomarker to investigate developmental neurotoxicity of some chemical pollutants.

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Curated mode-of-action data and effect concentrations for chemicals relevant for the aquatic environment
Authors
Kramer Lena, Schulze Tobias , Klüver Nils, Altenburger Rolf, Hackermüller Jörg, Krauss Martin, Busch Wibke
Journal
Scientific Data
Vol. 11
60
Date of publication
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Chemicals in the aquatic environment can be harmful to organisms and ecosystems. Knowledge on efect concentrations as well as on mechanisms and modes of interaction with biological molecules and signaling pathways is necessary to perform chemical risk assessment and identify toxic compounds. To this end, we developed criteria and a pipeline for harvesting and summarizing efect concentrations from the US ECOTOX database for the three aquatic species groups algae, crustaceans, and fsh and researched the modes of action of more than 3,300 environmentally relevant chemicals in literature and databases. We provide a curated dataset ready to be used for risk assessment based on monitoring data and the frst comprehensive collection and categorization of modes of action of environmental chemicals. Authorities, regulators, and scientists can use this data for the grouping of chemicals, the establishment of meaningful assessment groups, and the development of in vitro and in silico approaches for chemical testing and assessment.

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Why adverse outcome pathways need to be FAIR
Authors
Wittwehr Clemens, Clerbaux Laure-Alix, Edwards Stephen, Angrish Michelle, Mortensen Holly, Carusi Annamaria, Gromelski Maciej , Lekka Eftychia, Virvilis Vassilis Virvilis, Martens Marvin, Bonino da Silva Santos Luiz Olavo, Nymark Penny
Journal
ALTEX
Vol. 41
No. 1
50-56
Keywords
Adverse outcome pathways, FAIR data, Machine-actionability, Trust, Visibility
Date of publication
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Adverse outcome pathways (AOPs) provide evidence for demonstrating and assessing causality between measurable toxicological mechanisms and human or environmental adverse effects. AOPs have gained increasing attention over the past decade and are believed to provide the necessary steppingstone for more effective risk assessment of chemicals and materials and moving beyond the need for animal testing. However, as with all types of data and knowledge today, AOPs need to be reusable by machines, i.e., machine-actionable, in order to reach their full impact potential. Machine-actionability is supported by the FAIR principles, which guide findability, accessibility, interoperability, and reusability of data and knowledge. Here, we describe why AOPs need to be FAIR and touch on aspects such as the improved visibility and the increased trust that FAIRification of AOPs provides.

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A comprehensive battery of flow cytometric immunoassays for the in vitro testing of chemical effects in human blood cells
Journal
Frontiers in Immunology
Vol. 14
1327960
Keywords
Immune assays, Human blood, Chemical testing, Activation marker, Immune cells, Immunotox
Date of publication
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Background: There is a growing need for immunological assays to test toxic and modulatory effects of chemicals. The assays should be easy to use, reproducible and superior to cell line-based assays. We have therefore developed a comprehensive portfolio of assays based on primary human blood cells that are suitable for testing chemical effects.

Methods: The flow cytometry-based assays were designed to target a wide range of human peripheral blood mononuclear cells and whole blood, including T cells, NK cells, B cells, basophils and innate-like T cells such as γδT, MAIT and NKT cells. We have selected a set of activation markers for each immune cell, e.g: CD154 (T cells), CD137, CD107a (NK cells), CD63 (basophils), CD69, CD83 (B cells), CD69, IFN-γ (MAIT cells) and we selected cell specific stimuli: aCD3 antibodies (T cells); E. coli and cytokines IL-12/15/18 (MAIT cells); CpG ODN2006, R848 or aCD40 antibodies (B cells), fMLP or aFcϵR1 (basophils) or K562 cells (NK cells).

Results: By selecting immune cell-specific markers and cell-specific stimuli, we were able to induce particular immune responses from the targeted immune cells. For example, the response to stimulation with anti-CD3 antibodies was in 36.8% of CD107a+CD8+ cells. Cytokine stimulation induced the production of IFN-γ in 30% of MAIT cells. After stimulation with E. coli, around 50% of MAIT cells produced TNF. About 40% of basophils responded to aFcƐR1 stimulation. Similar activation ranges were achieved in K562-stimulated NK cells.

Conclusion: Our test portfolio covers the most relevant immune cells present in human blood, providing a solid basis for in vitro toxicity and immunomodulatory testing of chemicals. By using human blood, the natural composition of cells found in the blood can be determined and the effects of chemicals can be detected at the cellular level.

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Applicability of food monitoring data for assessing relative exposure contributions of pyrethroids in retrospective human biomonitoring risk estimations
Journal
Toxics
Vol. 12
No. 1
24
Keywords
Pyrethroids, Urinary levels, DCCA, CFMP, 3PBA, DBCA, F3PBA, CLF3CA, Pesticide risk, HBM4EU
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The use of pyrethroids is very broad and shows increasing trends. Human biomonitoring studies represent the best approach for realistic risk estimations, but their interpretation requires a tiered approach. A previous HBM4EU study indicated levels in European children groups just around the threshold for concern, requiring further refinement. The main difficulty is that several pyrethroids with different toxicity potencies generate the same urinary metabolites. As diet is the main pyrethroid source for the general population, EU food monitoring data reported by EFSA have been used to estimate the relative contribution of each pyrethroid. The main contributors were cypermethrin for DCCA and 3-PBA and lambda-cyhalothrin for CFMP. Urinary levels predicted from food concentration according to the EFSA diets were mostly within the range of measured levels, except 3-PBA and CFMP levels in children, both below measured levels. The predicted lower levels for 3-PBA can be explained by the very low Fue value, initially proposed as conservative, but that seems to be unrealistic. The discrepancies for CFMP are mostly for the highest percentiles and require further assessments. The refined assessments included the revision of the previously proposed human biomonitoring guidance values for the general population, HBM-GV Gen Pop, following recent toxicological reevaluations, and the estimation of hazard quotients (HQs) for each individual pyrethroid and for the combined exposure to all pyrethroids. All HQs were below 1, indicating no immediate concern, but attention is required, particularly for children, with HQs in the range of 0.2–0.3 for the highly exposed group. The application of probabilistic methods offers assessments at the population level, addressing the variability in exposure and risk and providing relevant information for Public Health impact assessments and risk management prioritization.

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Hazard characterization of Alternaria toxins to identify data gaps and improve risk assessment for human health
Authors
Louro Henriqueta, Vettorazzi Ariane, de Cerain Adela López, Spyropoulou Anastasia, Solhaug Anita, Straumfors Anne, Behr Anne-Cathrin, Mertens Birgit, Žegura Bojana, Fæste Christiane Kruse, Ndiaye Dieynaba, Spilioti Eliana, Varga Elisabeth, Dubreil Estelle, Borsos Eszter, Crudo Francesco, Eriksen Gunnar Sundstøl, Snapkow Igor, Henri Jérôme, Sanders Julie, Machera Kyriaki, Gaté Laurent, Le Hegarat Ludovic, Novak Matjaž, Marko Doris, Smith Nicola M., Krapf Solveig, Hager Sonja, Fessard Valérie, Kohl Yvonne, Silva Maria João, Dirven Hubert, Dietrich Jessica
Journal
Archives of Toxicology
Vol. 98
425–469
Keywords
Mycotoxin, Exposure routes, Genotoxicity, Endocrine disruption, Immunosuppression, Biotransformation, Toxicokinetics, Tenuazonic acid, Alternariol, Altenuene, Tentoxin, Altertoxin
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Fungi of the genus Alternaria are ubiquitous plant pathogens and saprophytes which are able to grow under varying temperature and moisture conditions as well as on a large range of substrates. A spectrum of structurally diverse secondary metabolites with toxic potential has been identified, but occurrence and relative proportion of the different metabolites in complex mixtures depend on strain, substrate, and growth conditions. This review compiles the available knowledge on hazard identification and characterization of Alternaria toxins. Alternariol (AOH), its monomethylether AME and the perylene quinones altertoxin I (ATX-I), ATX-II, ATX-III, alterperylenol (ALP), and stemphyltoxin III (STTX-III) showed in vitro genotoxic and mutagenic properties. Of all identified Alternaria toxins, the epoxide-bearing analogs ATX-II, ATX-III, and STTX-III show the highest cytotoxic, genotoxic, and mutagenic potential in vitro. Under hormone-sensitive conditions, AOH and AME act as moderate xenoestrogens, but in silico modeling predicts further Alternaria toxins as potential estrogenic factors. Recent studies indicate also an immunosuppressive role of AOH and ATX-II; however, no data are available for the majority of Alternaria toxins. Overall, hazard characterization of Alternaria toxins focused, so far, primarily on the commercially available dibenzo-α-pyrones AOH and AME and tenuazonic acid (TeA). Limited data sets are available for altersetin (ALS), altenuene (ALT), and tentoxin (TEN). The occurrence and toxicological relevance of perylene quinone-based Alternaria toxins still remain to be fully elucidated. We identified data gaps on hazard identification and characterization crucial to improve risk assessment of Alternaria mycotoxins for consumers and occupationally exposed workers.

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Mapping chemical footprints of organic micro pollutants in European streams
Authors
Finckh Saskia, Carmona Eric, Borchardt Dietrich, Büttner Olaf, Krauss Martin, Schulze Tobias, Yang Soohyun, Brack Werner
Journal
Environment International
Vol. 183
108371
Keywords
Environmental contamination, Chemical footprints, Planetary boundaries, Organic micropollutants, Chemical target screening, LC-HRMS, Toxic units, Urban discharge fraction, Stream order
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There is increasing awareness that chemical pollution of freshwater systems with complex mixtures of chemicals from domestic sources, agriculture and industry may cause a substantial chemical footprint on water organisms, pushing aquatic ecosystems outside the safe operating space. The present study defines chemical footprints as the risk that chemicals or chemical mixtures will have adverse effects on a specific group of organisms. The aim is to characterise these chemical footprints in European streams based on a unique and uniform screening of more than 600 chemicals in 445 surface water samples, and to derive site- and compound-specific information for management prioritisation purposes. In total, 504 pesticides, biocides, pharmaceuticals and other compounds have been detected, including frequently occurring and site-specific compounds with concentrations up to 74 µg/L. Key finding is that three-quarter of the investigated sites in 22 European river basins exceed established thresholds for chemical footprints in freshwater, leading to expected acute or chronic impacts on aquatic organisms. The largest footprints were recorded on invertebrates, followed by algae and fish. More than 70 chemicals exceed thresholds of chronic impacts on invertebrates. For all organism groups, pesticides and biocides were the main drivers of chemical footprints, while mixture impacts were particularly relevant for invertebrates. No clear significant correlation was found between chemical footprints and the urban discharge fractions, suggesting that effluent-specific quality rather than the total load of treated wastewater in the aquatic environment and the contribution of diffuse sources, e.g. from agriculture, determine chemical footprints.

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Acetylcholinesterase inhibition in rats and humans following acute fenitrothion exposure predicted by physiologically based kinetic modeling-facilitated quantitative in vitroto in vivo extrapolation
Journal
Environmental Science & Technology
Vol. 57
No. 49
20521-20531
Keywords
Anatomy, Inhibition, Peptides and proteins, Pest control, Rodent models
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Worldwide use of organophosphate pesticides as agricultural chemicals aims to maintain a stable food supply, while their toxicity remains a major public health concern. A common mechanism of acute neurotoxicity following organophosphate pesticide exposure is the inhibition of acetylcholinesterase (AChE). To support Next Generation Risk Assessment for public health upon acute neurotoxicity induced by organophosphate pesticides, physiologically based kinetic (PBK) modeling-facilitated quantitative in vitro to in vivo extrapolation (QIVIVE) approach was employed in this study, with fenitrothion (FNT) as an exemplary organophosphate pesticide. Rat and human PBK models were parametrized with data derived from in silico predictions and in vitro incubations. Then, PBK model-based QIVIVE was performed to convert species-specific concentration-dependent AChE inhibition obtained from in vitro blood assays to corresponding in vivo dose−response curves, from which points of departure (PODs) were derived. The obtained values for rats and humans were comparable with reported no-observed-adverse-effect levels (NOAELs). Humans were found to be more susceptible than rats toward erythrocyte AChE inhibition induced by acute FNT exposure due to interspecies differences in toxicokinetics and toxicodynamics. The described approach adequately predicts toxicokinetics and acute toxicity of FNT, providing a proof-of-principle for applying this approach in a 3R-based chemical risk assessment paradigm.

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Ecotoxicological Evaluation of Bisphenol A and Alternatives: A Comprehensive In Silico Modelling Approach
Journal
Journal of Xenobiotics
Vol. 13
No. 4
719-739
Keywords
Bisphenol A (BPA), BPA alternatives, Ecotoxicity assessment, In silico models, Principal component analysis (PCA), Environmental impact, Models, Chemical risk assessment
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Bisphenol A (BPA), a compound widely used in industrial applications, has raised concerns due to its environmental impact. As a key component in the manufacture of polycarbonate plastics and epoxy resins used in many consumer products, concerns about potential harm to human health and the environment are unavoidable. This study seeks to address these concerns by evaluating a range of potential BPA alternatives, focusing on their ecotoxicological properties. The research examines 76 bisphenols, including BPA derivatives, using a variety of in silico ecotoxicological models, although it should be noted that these models were not developed exclusively for this particular class of compounds. Consequently, interpretations should be made with caution. The results of this study highlight specific compounds of potential environmental concern and underscore the need to develop more specific models for BPA alternatives that will allow for more accurate and reliable assessment.

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Current-use pesticide exposure pathways in Czech adults and children from the CELSPAC-SPECIMEn cohort
Authors
Šulc Libor, Figueiredo Daniel, Huss Anke, Kalina Jiří, Gregor Petr, Janoš Tomáš, Šenk Petr, Dalecká Andrea, Andrýsková Lenka, Kodeš Vít, Čupr Pavel
Journal
Environment International
Vol. 181
No. 108297
Keywords
Current-use pesticides, HBM4EU, Dietary exposure, Pesticide application, Environmental exposure, Organic diet, Exposure assessment, Models, Human biomonitoring, Human health
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In this study, we aimed to characterise exposure to pyrethroids, organophosphates, and tebuconazole through multiple pathways in 110 parent–child pairs participating in the CELSPAC–SPECIMEn study.

First, we estimated the daily intake (EDI) of pesticides based on measured urinary metabolites. Second, we compared EDI with estimated pesticide intake from food. We used multiple linear regression to identify the main predictors of urinary pesticide concentrations. We also assessed the relationship between urinary pesticide concentrations and organic and non-organic food consumption while controlling for a range of factors. Finally, we employed a model to estimate inhalation and dermal exposure due to spray drift and volatilization after assuming pesticide application in crop fields.

EDI was often higher in children in comparison to adults, especially in the winter season. A comparison of food intake estimates and EDI suggested diet as a critical pathway of tebuconazole exposure, less so in the case of organophosphates. Regression models showed that consumption per g of peaches/apricots was associated with an increase of 0.37% CI [0.23% to 0.51%] in urinary tebuconazole metabolite concentrations. Consumption of white bread was associated with an increase of 0.21% CI [0.08% to 0.35%], and consumption of organic strawberries was inversely associated (-61.52% CI [-79.34% to -28.32%]), with urinary pyrethroid metabolite concentrations. Inhalation and dermal exposure seemed to represent a relatively small contribution to pesticide exposure as compared to dietary intake.

In our study population, findings indicate diet plays a significant role in exposure to the analysed pesticides. We found an influence of potential exposure due to spray drift and volatilization among the subpopulation residing near presumably sprayed crop fields to be minimal in comparison. However, the lack of data indicating actual spraying occurred during the critical 24-hour period prior to urine sample collection could be a significant contributing factor.

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Learning from safe-by-design for safe-and-sustainable-by-design: mapping the current landscape of safe-by-design reviews, case studies, and frameworks
Authors
Sudheshwar Akshat, Apel Christina, Kümmerer Klaus, Wang Zhanyun, Soeteman-Hernández Lya G., Valsami-Jones Eugénia, Som Claudia, Nowack Bernd
Journal
Environment International
Vol. 183
108305
Keywords
Safe-by-Design (SbD), Safe and Sustainable-by-Design (SSbD), Literature mapping, SSbD implementation
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With the introduction of the European Commission's “Safe and Sustainable-by-Design” (SSbD) framework, the interest in understanding the implications of safety and sustainability assessments of chemicals, materials, and processes at early-innovation stages has skyrocketed. Our study focuses on the “Safe-by-Design” (SbD) approach from the nanomaterials sector, which predates the SSbD framework.
In this assessment, SbD studies have been compiled and categorized into reviews, case studies, and frameworks. Reviews of SbD tools have been further classified as quantitative, qualitative, or toolboxes and repositories. We assessed the SbD case studies and classified them into three categories: safe(r)-by-modeling, safe(r)-by-selection, or safe(r)-by-redesign. This classification enabled us to understand past SbD work and subsequently use it to define future SSbD work so as to avoid confusion and possibilities of “SSbD-washing” (similar to greenwashing). Finally, the preexisting SbD frameworks have been studied and contextualized against the SSbD framework.
Several key recommendations for SSbD based on our analysis can be made. Knowledge gained from existing approaches such as SbD, green and sustainable chemistry, and benign-by-design approaches needs to be preserved and effectively transferred to SSbD. Better incorporation of chemical and material functionality into the SSbD framework is required. The concept of lifecycle thinking and the stage-gate innovation model need to be reconciled for SSbD. The development of high-throughput screening models is critical for the operationalization of SSbD. We conclude that the rapid pace of both SbD and SSbD development necessitates a regular mapping of the newly published literature that is relevant to this field.
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Combined chronic dietary exposure to four nephrotoxic metals exceeds tolerable intake levels in the adult population of 10 European countries
Authors
Sprong R. Corinne, Van den Brand Annick D., Van Donkersgoed Gerda, Blaznik Urska, Christodoulou Despo, Crépet Amélie, Da Graca Dias Maria, Jensen Bodil Hamborg, Moretto Angelo, Rauscher-Gabernig Elke, Ruprich Jiri, Sokolic Darja, Van Klaveren Jacob D., Luijten Mirjam, Mengelers Marcel J.B.
Journal
Food Additives and Contaminants Part A
Vol. 40
No. 12
1568-1588
Keywords
Cadmium, Lead, Inorganic arsenic, Inorganic mercury, Nephrotoxicity, Combined exposure
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A mixture risk assessment (MRA) for four metals relevant to chronic kidney disease (CKD) was performed. Dietary exposure to cadmium or lead alone exceeded the respective reference values in the majority of the 10 European countries included in our study. When the dietary exposure to those metals and inorganic mercury and inorganic arsenic was combined following a classical or personalised modified reference point index (mRPI) approach, not only high exposure (95th percentile) estimates but also the mean exceeded the tolerable intake of the mixture in all countries studied. Cadmium and lead contributed most to the combined exposure, followed by inorganic arsenic and inorganic mercury. The use of conversion factors for inorganic arsenic and inorganic mercury from total arsenic and total mercury concentration data was a source of uncertainty. Other uncertainties were related to the use of different principles to derive reference points. Yet, MRA at the target organ level, as performed in our study, could be used as a way to efficiently prioritise assessment groups for higher-tier MRA. Since the combined exposure to the four metals exceeded the tolerable intake, we recommend a refined MRA based on a common, specific nephrotoxic effect and relative potency factors (RPFs) based on a similar effect size.

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Potential for machine learning to address data gaps in human toxicity and ecotoxicity characterization
Authors
von Borries Kerstin, Holmquist Hanna, Kosnik Marissa, Katie Beckwith, Jolliet Olivier, Goodman Jonathan, Fantke Peter
Journal
Environmental Science and Technology
Vol. 57 (46)
18259–18270
Keywords
Degradation, Environmental pollution, Natural resources, Soils, Toxicity
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Machine Learning (ML) is increasingly applied to fill data gaps in assessments to quantify impacts associated with chemical emissions and chemicals in products. However, the systematic application of ML-based approaches to fill chemical data gaps is still limited, and their potential for addressing a wide range of chemicals is unknown. We prioritized chemical-related parameters for chemical toxicity characterization to inform ML model development based on two criteria: (1) each parameter's relevance to robustly characterize chemical toxicity described by the uncertainty in characterization results attributable to each parameter and (2) the potential for ML-based approaches to predict parameter values for a wide range of chemicals described by the availability of chemicals with measured parameter data. We prioritized 13 out of 38 parameters for developing ML-based approaches, while flagging another nine with critical data gaps. For all prioritized parameters, we performed a chemical space analysis to assess further the potential for ML-based approaches to predict data for diverse chemicals considering the structural diversity of available measured data, showing that ML-based approaches can potentially predict 8–46% of marketed chemicals based on 1–10% with available measured data. Our results can systematically inform future ML model development efforts to address data gaps in chemical toxicity characterization.

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A benchmark dataset for machine learning in ecotoxicology
Authors
Schür Christoph, Gasser Lilian, Perez-Cruz Fernando, Schirmer Kristin, Baity-Jesi Marco
Journal
Nature Scientific Data
Vol. 10
No. 718 (2023)
Keywords
Machine learning, Ecotoxicology, Benchmark, Scientificdata, Fish, Algae, Crustaceans, Predictive toxicology, Hazard assessment, Models
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The use of machine learning for predicting ecotoxicological outcomes is promising, but underutilized. The curation of data with informative features requires both expertise in machine learning as well as a strong biological and ecotoxicological background, which we consider a barrier of entry for this kind of research. Additionally, model performances can only be compared across studies when the same dataset, cleaning, and splittings were used. Therefore, we provide ADORE, an extensive and well-described dataset on acute aquatic toxicity in three relevant taxonomic groups (fish, crustaceans, and algae). The core dataset describes ecotoxicological experiments and is expanded with phylogenetic and species-specific data on the species as well as chemical properties and molecular representations. Apart from challenging other researchers to try and achieve the best model performances across the whole dataset, we propose specific relevant challenges on subsets of the data and include datasets and splittings corresponding to each of these challenge as well as in-depth characterization and discussion of train-test splitting approaches.

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Acceptance criteria for new approach methods in toxicology and human health-relevant life science research - part I
Authors
Holzer Anna-Katharina, Dreser Nadine, Pallocca Giorgia, Mangerich Aswin, Stacey Glyn, Dipalo Michele, Van de Water Bob, Rovida Costanza, Wirtz Petra H., Van Vugt Barbara, Panzarella Giulia, Hartung Thomas, Terron Andrea, Mangas Iris, Herzler Matthias, Marx-Stoelting Philip, Coecke Sandra, Leist Marcel
Journal
ALTEX
Vol. 40
No. 4
706–712.
Keywords
BenchMarks series, GIVIMP, In vitro, Methods, Validation, Quality control, NAM
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Every test procedure, scientific and non-scientific, has inherent uncertainties, even when performed according to a standard operating procedure (SOP). In addition, it is prone to errors, defects, and mistakes introduced by operators, laboratory equipment, or materials used. Adherence to an SOP and comprehensive validation of the test method cannot guarantee that each test run produces data within the acceptable range of variability and with the precision and accuracy determined during the method validation. We illustrate here (part I) why controlling the validity of each test run is an important element of experimental design. The definition and application of acceptance criteria (AC) for the validity of test runs is important for the setup and use of test methods, particularly for the use of new approach methods (NAM) in toxicity testing. AC can be used for decision rules on how to handle data, e.g., to accept the data for further use (AC fulfilled) or to reject the data (AC not fulfilled). The adherence to AC has important requirements and consequences that may seem surprising at first sight: (i) AC depend on a test method’s objectives, e.g., on the types/concentrations of chemicals tested, the regulatory context, the desired throughput; (ii) AC are applied and documented at each test run, while validation of a method (including the definition of AC) is only performed once; (iii) if AC are altered, then the set of data produced by a method can change. AC, if missing, are the blind spot of quality assurance: Test results may not be reliable and comparable. The establishment and uses of AC will be further detailed in part II of this series.Received October 2, 2023; © The Authors, 2023. ALTEX 40(4), 706-712.doi:10.14573/altex.2310021Correspondence: Marcel Leist, PhD In vitro Toxicology and BiomedicineDept inaugurated by the Doerenkamp-Zbinden Foundation at the University of KonstanzUniversitaetsstr. 10, 78464 Konstanz, Germany(marcel [dot] leistatuni-konstanz [dot] de)This is an Open Access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium, provi-ded the original work is appropriately cited.
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Comparison of aggregated exposure to perfluorooctanoic acid (PFOA) from diet and personal care products with concentrations in blood using a PBPK model – Results from the Norwegian biomonitoring study in EuroMix
Authors
Husøy Trine, Caspersen Ida H., Thépaut Elisa, Knutsen Helle, Haug Line S., Andreassen Monica, Gkrillas Athanasios, Lindeman Birgitte, Thomsen Cathrine, Herzke Dorte, Dirven Hubert, Wojewodzic Marcin W.
Journal
Environmental Research
Vol. 239
No. 2
117341
Keywords
Exposure, Biomonitoring, Physiologically based pharmacokinetic modelling, Diet, Personal care products, Cosmetics
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Per- and polyfluoroalkyl substances (PFAS) constitute a large group of compounds that are water, stain, and oil repellent. Numerous sources contribute to the blood levels of PFAS in the European population. The main contributor for perfluorooctanoic acid (PFOA) is food, house dust, consumer products and personal care products (PCPs).

The purpose of the present work is to calculate the dietary and dermal external exposure to PFOA, estimate the aggregated internal exposure from diet and PCPs using a PBPK model, and compare estimates with measured concentrations.

Detailed information on diet and PCP use from the EuroMix study is combined with concentration data of PFOA in food and PCPs in a probabilistic exposure assessment. A physiologically based pharmacokinetic model (PBPK) was further refined by incorporating a dermal exposure pathway, and changes in the kidney and faecal excretion.

The aggregated internal exposure using the PBPK model shows that the major contributor to the internal exposure is diet for both males and females. The estimated internal exposure of PFOA for the EuroMix population was in the same range but lower than the measured blood concentrations using the lower bound (LB) external exposure estimates, showing that the LB estimates are underestimations. For seven females the internal exposure of PFOA were higher from PCPs than from diet.

PCPs and diet contributed in the same range to the internal PFOA exposure for several women participating in EuroMix. This calls for additional studies on exposure to PFOA and possibly other PFAS from PCPs, especially for women. Overall, PBPK modelling was shown as valuable tool in understanding the sources of PFOA exposure and in guiding risk assessments and regulatory decisions.

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Combined western diet and bisphenol A exposure induces an oxidative stress-based paraoxonase 1 response in larval zebrafish
Authors
Van den Boom Rik, Vergauwen Lucia, Koedijk Noortje, Da Silva Katyeny Manuela, Covaci Adrian, Knapen Dries
Journal
Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology
Vol. 274
109758
Keywords
Bisphenol A, Western diet, Metabolism, Metabolic disorders, Lipid metabolism, Antioxidant
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Paraoxonase 1 (PON1) is an antioxidant enzyme linked to metabolic disorders by genome-wide association studies in humans. Exposure to metabolic disrupting chemicals (MDCs) such as bisphenol A (BPA), together with genetic and dietary factors, can increase the risk of metabolic disorders. The objective of this study was to investigate how PON1 responds to the metabolic changes and oxidative stress caused by a western diet, and whether exposure to BPA alters the metabolic and PON1 responses. Zebrafish larvae at 14 days post fertilization were fed a custom-made western diet with and without aquatic exposure to two concentrations of BPA for 5 days. A combination of western diet and 150 μg/L BPA exposure resulted in a stepwise increase in weight, length and oxidative stress, suggesting that BPA amplifies the western diet-induced metabolic shift. PON1 arylesterase activity was increased in all western diet and BPA exposure groups and PON1 lactonase activity was increased when western diet was combined with exposure to 1800 μg/L BPA. Both PON1 activities were positively correlated to oxidative stress. Based on our observations we hypothesize that a western diet caused a shift towards fatty acid-based metabolism, which was increased by BPA exposure. This shift resulted in increased oxidative stress, which in turn was associated with a PON1 activity increase as an antioxidant response. This is the first exploration of PON1 responses to metabolic challenges in zebrafish, and the first study of PON1 in the context of MDC exposure in vertebrates.

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Identification of the bacterial metabolite aerugine as potential trigger of human dopaminergic neurodegeneration
Authors
Leist Marcel, Ückert Anna-Katharina, Rütschlin Sina, Gutbier Simon, Wörz Nathalie Christine, Miah Mahfuzur R., Martins Airton C., Hauer Isa, Holzer Anna-Katharina, Meyburg Birthe, Mix Ann-Kathrin, Hauck Christof R., Aschner Michael, Böttcher Thomas
Journal
Environment International
Vol. 180
108229
Keywords
Dopaminergic neurodegeneration, Streptomyces venezuelae, Bacterial toxin, Ferroptosis, Caenorhabditis elegans, Parkinson’s disease
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The causes of nigrostriatal cell death in idiopathic Parkinson’s disease are unknown, but exposure to toxic chemicals may play some role. We followed up here on suggestions that bacterial secondary metabolites might be selectively cytotoxic to dopaminergic neurons. Extracts from Streptomyces venezuelae were found to kill human dopaminergic neurons (LUHMES cells). Utilizing this model system as a bioassay, we identified a bacterial metabolite known as aerugine (C10H11NO2S; 2-[4-(hydroxymethyl)-4,5-dihydro-1,3-thiazol-2-yl]phenol) and confirmed this finding by chemical re-synthesis. This 2-hydroxyphenyl-thiazoline compound was previously shown to be a product of a wide-spread biosynthetic cluster also found in the human microbiome and in several pathogens. Aerugine triggered half-maximal dopaminergic neurotoxicity at 3–4 µM. It was less toxic for other neurons (10–20 µM), and non-toxic (at <100 µM) for common human cell lines. Neurotoxicity was completely prevented by several iron chelators, by distinct anti-oxidants and by a caspase inhibitor. In the Caenorhabditis elegans model organism, general survival was not affected by aerugine concentrations up to 100 µM. When transgenic worms, expressing green fluorescent protein only in their dopamine neurons, were exposed to aerugine, specific neurodegeneration was observed. The toxicant also exerted functional dopaminergic toxicity in nematodes as determined by the “basal slowing response” assay. Thus, our research has unveiled a bacterial metabolite with a remarkably selective toxicity toward human dopaminergic neurons in vitro and for the dopaminergic nervous system of Caenorhabditis elegans in vivo. These findings suggest that microbe-derived environmental chemicals should be further investigated for their role in the pathogenesis of Parkinson's disease.

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Ciona spp. and ascidians as bioindicator organisms for evaluating effects of endocrine disrupting chemicals: A discussion paper
Authors
Beyer Jonny, Song You, Lillicrap Adam, Rodríguez-Satizábal Simón, Chatzigeorgiou Marios
Journal
Marine Environmental Research
Vol. 191
106170
Keywords
Ascidians, Ciona intestinalis, Toxicity bioassay, Endocrine disrupting effects, 3Rs
Date of publication
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In context of testing, screening and monitoring of endocrine-disrupting (ED) type of environmental pollutants, tunicates could possibly represent a particularly interesting group of bioindicator organisms. These primitive chordates are already important model organisms within developmental and genomics research due to their central position in evolution and close relationship to vertebrates. The solitary ascidians, such as the genus Ciona spp. (vase tunicates), could possibly be extra feasible as ED bioindicators. They have a free-swimming, tadpole-like larval stage that develops extremely quickly (<20 h under favorable conditions), has a short life cycle (typically 2–3 months), are relatively easy to maintain in laboratory culture, have fully sequenced genomes, and transgenic embryos with 3D course data of the embryo ontogeny are available. In this article, we discuss possible roles of Ciona spp. (and other solitary ascidians) as ecotoxicological bioindicator organisms in general but perhaps especially for effect studies of contaminants with presumed endocrine disrupting modes of action.

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Protocol for designing INVITES-IN, a tool for assessing the internal validity of in vitro studies
Authors
Svendsen Camilla, Whaley Paul, Vist Gunn Elisabeth, Husøy Trine, Beronius Anna, Di Consiglio Emma, Druwe Ingrid, Hartung Thomas, Hatzi Vasiliki I., Hoffmann Sebastian, Hooijmans Carlijn R., Machera Kyriaki, Robinson Joshua F., Roggen Erwin, Rooney Andrew A., Roth Nicolas, Spilioti Eliana, Spyropoulou Anastasia, Tcheremenskaia Olga, Testai Emanuela, Vinken Mathieu, Mathisen Gro Haarklou
Journal
Evidence-Based Toxicology
Vol. 1
No. 1
1-5
Keywords
Cell culture, NAMs, Next generation risk assessment, Risk of bias
Date of publication
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This protocol describes the design and development of a tool for evaluation of the internal validity of in vitro studies, which is needed to include the data as evidence in systematic reviews and chemical risk assessments. The tool will be designed specifically to be applied to cell culture studies, including, but not restricted to, studies meeting the new approach methodology (NAM) definition. The tool is called INVITES-IN (IN VITro Experimental Studies INternal validity).
In this protocol, three of the four studies that will be performed to create the release version of INVITES-IN are described. In the first study, evaluation of existing assessment tools will be combined with focus group discussions to identify how characteristics of the design or conduct of an in vitro study can affect its internal validity. Bias domains and items considered to be of relevance for in
vitro studies will be identified. In the second study, group agreement on internal validity domains and items of importance for in vitro studies will be identified via a modified Delphi methodology. In the third study, the draft version of the tool will be created, based on the data on relevance and importance of bias domains and items collected in Studies 1 and 2. A separate protocol will be prepared for the fourth study, which includes the user testing and validation of the tool, and collection of users’ experience.

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Adverse outcome pathway-based analysis of liver steatosis in vitro using human liver cell lines
Authors
Karaca Mawien, Fritsche Kristin, Lichtenstein Dajana, Vural Ozlem, Kreuzer Katrin, Alarcan Jimmy, Braeuning Albert, Marx-Stoelting Philip, Tralau Tewes
Journal
STAR Protocols
Vol. 4
No. 3
Keywords
Cell culture, Cell-based assays, Gene expression
Date of publication
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Here, we present an in vitro test battery to analyze chemicals for their potential to induce liver triglyceride accumulation, a hallmark of liver steatosis. We describe steps for using HepG2 and HepaRG human hepatoma cells in conjunction with a combination of several in vitro assays covering the different molecular initiating events and key events of the respective adverse outcome pathway. This protocol is suitable for assessing single substance effects as well as mixtures allowing their classification as steatotic or non-steatotic. 

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A review on aquatic toxins - Do we really know it all regarding the environmental risk posed by phytoplankton neurotoxins?
Authors
Pinto Albano, Botelho Maria João, Churro Catarina, Asselman Jana, Pereira Patrícia, Pereira Joana Luísa
Journal
Journal of Environmental Management
Vol. 345
118769
Keywords
Harmful algal blooms, Toxic cyanobacteria, Cyanotoxins, Marine algal toxins, Neurotoxins, Human and environmental health
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Aquatic toxins are potent natural toxins produced by certain cyanobacteria and marine algae species during harmful cyanobacterial and algal blooms (CyanoHABs and HABs, respectively). These harmful bloom events and the toxins produced during these events are a human and environmental health concern worldwide, with occurrence, frequency and severity of CyanoHABs and HABs being predicted to keep increasing due to ongoing climate change scenarios. These contexts, as well as human health consequences of some toxins produced during bloom events have been thoroughly reviewed before. Conversely, the wider picture that includes the non-human biota in the assessment of noxious effects of toxins is much less covered in the literature and barely covered by review works. Despite direct human exposure to aquatic toxins and related deleterious effects being responsible for the majority of the public attention to the blooms' problematic, it constitutes a very limited fraction of the real environmental risk posed by these toxins. The disruption of ecological and trophic interactions caused by these toxins in the aquatic biota building on deleterious effects they may induce in different species is paramount as a modulator of the overall magnitude of the environmental risk potentially involved, thus necessarily constraining the quality and efficiency of the management strategies that should be placed. In this way, this review aims at updating and consolidating current knowledge regarding the adverse effects of aquatic toxins, attempting to going beyond their main toxicity pathways in human and related models’ health, i.e., also focusing on ecologically relevant model organisms. For conciseness and considering the severity in terms of documented human health risks as a reference, we restricted the detailed revision work to neurotoxic cyanotoxins and marine toxins. This comprehensive revision of the systemic effects of aquatic neurotoxins provides a broad overview of the exposure and the hazard that these compounds pose to human and environmental health. Regulatory approaches they are given worldwide, as well as (eco)toxicity data available were hence thoroughly reviewed. Critical research gaps were identified particularly regarding (i) the toxic effects other than those typical of the recognized disease/disorder each toxin causes following acute exposure in humans and also in other biota; and (ii) alternative detection tools capable of being early-warning signals for aquatic toxins occurrence and therefore provide better human and environmental safety insurance. Future directions on aquatic toxins research are discussed in face of the existent knowledge, with particular emphasis on the much-needed development and implementation of effective alternative (eco)toxicological biomarkers for these toxins. The wide-spanning approach followed herein will hopefully stimulate future research more broadly addressing the environmental hazardous potential of aquatic toxins.

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A data-derived reference mixture representative of European wastewater treatment plant effluents to complement mixture assessment
Authors
Beckers Liza-Marie, Busch Wibke, Altenburger Rolf, Brack Werner, Escher Beate Isabella, Hackermüller Jörg, Hassold Enken, Illing Gianina, Krauss Martin, Krüger Janet, Michaelis Paul, Schüttler Andreas, Stevens Sarah
Journal
Environment International
Vol. 179
108155
Keywords
Mixture risk assessment, Cell assays, Organism-based assays, Organic micropollutants, Effect data
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Aquatic environments are polluted with a multitude of organic micropollutants, which challenges risk assessment
due the complexity and diversity of pollutant mixtures. The recognition that certain source-specific background
pollution occurs ubiquitously in the aquatic environment might be one way forward to approach mixture risk
assessment. To investigate this hypothesis, we prepared one typical and representative WWTP effluent mixture of
organic micropollutants (EWERBmix) comprised of 81 compounds selected according to their high frequency of
occurrence and toxic potential. Toxicological relevant effects of this reference mixture were measured in eight
organism- and cell-based bioassays and compared with predicted mixture effects, which were calculated based
on effect data of single chemicals retrieved from literature or different databases, and via quantitative structure-
activity relationships (QSARs). The results show that the EWERBmix supports the identification of substances
which should be considered in future monitoring efforts. It provides measures to estimate wastewater back-
ground concentrations in rivers under consideration of respective dilution factors, and to assess the extent of
mixture risks to be expected from European WWTP effluents. The EWERBmix presents a reasonable proxy for
regulatory authorities to develop and implement assessment approaches and regulatory measures to address
mixture risks. The highlighted data gaps should be considered for prioritization of effect testing of most prevalent
and relevant individual organic micropollutants of WWTP effluent background pollution. The here provided
approach and EWERBmix are available for authorities and scientists for further investigations. The approach
presented can furthermore serve as a roadmap guiding the development of archetypic background mixtures for
other sources, geographical settings and chemical compounds, e.g. inorganic pollutants.

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Development of a physiologically based toxicokinetic model for lead in pregnant women: the role of bone tissue in the maternal and fetal internal exposure
Journal
Toxicology and Applied Pharmacology
Vol. 476
116651
Keywords
P-PBPK Model, Lead, Metal, Pregnancy, Bone remodeling, Resorption, Placental transfer, Fetus exposure, Monte Carlo simulations, Parameter estimation
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Epidemiological studies have shown associations between prenatal exposure to lead (Pb) and neurodevelopmental effects in young children. Prenatal exposure is generally characterized by measuring the concentration in the umbilical cord at delivery or in the maternal blood during pregnancy. To assess internal Pb exposure during prenatal life, we developed a pregnancy physiologically based pharmacokinetic (p-PBPK) model that to simulates Pb levels in blood and target tissues in the fetus, especially during critical periods for brain development. An existing Pb PBPK model was adapted to pregnant women and fetuses. Using data from literature, both the additional maternal bone remodeling, that causes Pb release into the blood, and the Pb placental transfers were estimated by Bayesian inference. Additional maternal bone remodeling was estimated to start at 21.6 weeks. Placental transfers were estimated between and L.day-1 at delivery with high interindividual variability. Once calibrated, the p-PBPK model was used to simulate fetal exposure to Pb. Internal fetal exposure greatly varies over the pregnancy with two peaks of Pb levels in blood and brain at the end of the 1st and 3rd trimesters. Sensitivity analysis shows that the fetal blood lead levels are affected by the maternal burden of bone Pb via maternal bone remodeling and by fetal bone formation at different pregnancy stages. Coupling the p-PBPK model with an effect model such as an adverse outcome pathway could help to predict the effects on children’s neurodevelopment.

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Deoxynivalenol increases pro-inflammatory cytokine secretion and reduces  primary bile acid transport in an inflamed intestinal in vitro  co-culture model
Journal
Food Research International
Vol. 173
No. 1
113323
Keywords
Hazard assessment, Innovative methods and tools , Adverse outcome pathways, Biomarkers, Chemical risk assessment
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The fungal secondary metabolite deoxynivalenol (DON) that can contaminate cereal-based food products not only induces inflammation but also reduces bile acid absorption by a healthy human intestine. Bile acid malabsorption is commonly observed in individuals with an inflamed intestine. Here we studied the effects of DON on inflammation and primary bile acid transport using an in vitro model for an inflamed intestine. An inflamed intestinal in vitro model was established by co-culturing a Caco-2 cell-layer and LPS-pre-stimulated THP-1 macrophages in Transwells. We observed a decreased transport of 5 primary bile acids across inflamed co-cultures compared to healthy co-cultures but not of chenodeoxycholic acid. DON exposure further reduced the transport of the affected primary bile acids across the inflamed co-cultures. DON exposure also enhanced the secretion of pro-inflammatory cytokines in the inflamed co-cultures, while it did not increase the proinflammatory cytokines secretion from LPS-pre-stimulated THP-1 monocultures. Exposure of Caco-2 cell-layers to pro-inflammatory cytokines or THP-1 conditioned media partly mimicked the DON-induced effects of the coculture model. Local activation of intestinal immune cells reinforces the direct pro-inflammatory effects of DON on intestinal epithelial cells. This affects the bile acid intestinal kinetics in an inflamed intestine. 

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A human iPSC-based in vitro neural network formation assay to investigate neurodevelopmental toxicity of pesticides
Authors
Bartmann Kristina, Bendt Farina, Dönmez Arif, Haag Daniel, Keßel H. Eike, Masjosthusmann Stefan, Noel Christopher, Wu Ji, Zhou Peng, Fritsche Ellen
Journal
ALTEX
Vol. 40
No. 3
452-470
Keywords
Developmental neurotoxicity, Microelectrode arrays, Electrical activity, Human induced pluripotent stem cells, New approach methodologies
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Proper brain development is based on the orchestration of key neurodevelopmental processes (KNDP), including the for-mation and function of neural networks. If at least one KNDP is affected by a chemical, an adverse outcome is expected. To enable a higher testing throughput than the guideline animal experiments, a developmental neurotoxicity (DNT) in vitrotesting battery (DNT IVB) comprising a variety of assays that model several KNDPs was set up. Gap analysis revealed the need for a human-based assay to assess neural network formation and function (NNF). Therefore, we established the human NNF (hNNF) assay. A co-culture comprised of human induced pluripotent stem cell (hiPSC)-derived excitatory and inhibitory neurons as well as primary human astroglia was differentiated for 35 days on microelectrode arrays (MEA), and spontaneous electrical activity, together with cytotoxicity, was assessed on a weekly basis after washout of the compounds 24 h prior to measurements. In addition to the characterization of the test system, the assay was challenged with 28 com-pounds, mainly pesticides, identifying their DNT potential by evaluation of specific spike-, burst-, and network parameters. This approach confirmed the suitability of the assay for screening environmental chemicals. Comparison of benchmark con-centrations (BMC) with an NNF in vitro assay (rNNF) based on primary rat cortical cells revealed differences in sensitivity. Together with the successful implementation of hNNF data into a postulated stressor-specific adverse outcome pathway (AOP) network associated with a plausible molecular initiating event for deltamethrin, this study suggests the hNNF assay as a useful complement to the DNT IVB.

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Innovative tools and methods for toxicity testing within PARC work package 5 on hazard assessment
Authors
de Castelbajac Thalia, Aiello Kiara, Garcia Arenas Celia, Svingen Terje, Ramhoj Louise, Zalko Daniel, Barouki Robert, Vanhaecke Tamara, Rogiers Vera, Audebert Marc, Oelgeschlaeger Michael, Braeuning Albert, Blanc Etienne, Tal Tamara, Ruegg Joelle, Fritsche Ellen, Philip Marx-Stoelting, Rivière Gilles
Journal
Frontiers in Toxicology
Vol. 5
1216369
Keywords
PARC, NGRA, NAMs, Hazard assessment, Human health
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New approach methodologies (NAMs) have the potential to become a major component of regulatory risk assessment, however, their actual implementation is challenging. The European Partnership for the Assessment of Risks from Chemicals (PARC) was designed to address many of the challenges that exist for the development and implementation of NAMs in modern chemical risk assessment. PARC’s proximity to national and European regulatory agencies is envisioned to ensure that all the research and innovation projects that are initiated within PARC agree with actual regulatory needs. One of the main aims of PARC is to develop innovative methodologies that will directly aid chemical hazard identification, risk assessment, and regulation/policy. This will facilitate the development of NAMs for use in risk assessment, as well as the transition from an endpoint-based animal testing strategy to a more mechanistic-based NAMs testing strategy, as foreseen by the Tox21 and the EU Chemical’s Strategy for Sustainability. This work falls under work package 5 (WP5) of the PARC initiative. There are three different tasks within WP5, and this paper is a general overview of the five main projects in the Task 5.2 ‘Innovative Tools and methods for Toxicity Testing,’ with a focus on Human Health. This task will bridge essential regulatory data gaps pertaining to the assessment of toxicological prioritized endpoints such as non-genotoxic carcinogenicity, immunotoxicity, endocrine disruption (mainly thyroid), metabolic disruption, and (developmental and adult) neurotoxicity, thereby leveraging OECD’s and PARC’s AOP frameworks. This is intended to provide regulatory risk assessors and industry stakeholders with relevant, affordable and reliable assessment tools that will ultimately contribute to the application of next-generation risk assessment (NGRA) in Europe and worldwide.

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REACH Out-Numbered! The Future of REACH and Animal Numbers
Authors
Hartung Thomas, Leist Marcel, Busquet Francois, Rovida Costanza
Journal
ALTEX
Vol. 40
No. 3
367–388
Keywords
Human health, Regulatory risk assessment
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The EU's REACH (Registration, Evaluation, Authorisation and Restriction of Chemicals) Regulation requires animal testing only as a last resort. However, our study (Knight et al., 2023) in this issue reveals that approximately 2.9 million animals have been used for REACH testing for reproductive toxicity, developmental toxicity, and repeated-dose toxicity alone as of December 2022. Currently, additional tests requiring about 1.3 million more animals are in the works. As compliance checks continue, more animal tests are anticipated. According to the European Chemicals Agency (ECHA), 75% of read-across methods have been rejected during compliance checks. Here, we estimate that 0.6 to 3.2 million animals have been used for other endpoints, likely at the lower end of this range. The ongoing discussion about the grouping of 4,500 registered petrochemicals can still have a major impact on these numbers. The 2022 amendment of REACH is estimated to add 3.6 to 7.0 million animals. This information comes as the European Parliament is set to consider changes to REACH that could further increase animal testing. Two proposals currently under discussion would likely necessitate new animal testing: extending the requirement for a chemical safety assessment (CSA) to Annex VII substances could add 1.6 to 2.6 million animals, and the registration of polymers adds a challenge comparable to the petrochemical discussion. These findings highlight the importance of understanding the current state of REACH animal testing for the upcoming debate on REACH revisions as an opportunity to focus on reducing animal use. 

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New approach methodologies to facilitate and improve the hazard assessment of non-genotoxic carcinogens—a PARC project
Authors
Audebert Marc, Assmann Ann-Sophie, Azqueta Amaya, Benfenati Emilio, Babica Pavel, Bortoli Sylvie, Bouwman Peter, Braeuning Albert, Burgdorf Tanja, Coumoul Xavier, Debizet Kloé, Dusinska Maria, Ertych Norman, Fahrer Jörg, Fetz Verena, Le Hégarat Ludovic, López de Cerai Adela, Heusinkveld Harm J., Hogeveen Kevin, Jacobs Miriam N., Luijten Mirjam, Raitano Giuseppa, Recoules Cynthia, Rundén-Pran Elise, Saleh Mariam, Sovadinová Iva, Stampar Martina, Thibol Lea, Tomkiewicz Céline, Vettorazzi Ariane, Van de Water Bob, El Yamani Naouale, Zegura Bojana, Oelgeschläger Michael
Journal
Frontiers in Toxicology
Vol. 5
1220998
Keywords
Non-genotoxic carcinogens, NGTxC, New approach methodologies, NAM, PARC
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Carcinogenic chemicals, or their metabolites, can be classified as genotoxic or non-genotoxic carcinogens (NGTxCs). Genotoxic compounds induce DNA damage, which can be detected by an established in vitro and in vivo battery of genotoxicity assays. For NGTxCs, DNA is not the primary target, and the possible modes of action (MoA) of NGTxCs are much more diverse than those of genotoxic compounds, and there is no specific in vitro assay for detecting NGTxCs. Therefore, the evaluation of the carcinogenic potential is still dependent on long-term studies in rodents. This 2-year bioassay, mainly applied for testing agrochemicals and pharmaceuticals, is time-consuming, costly and requires very high numbers of animals. More importantly, its relevance for human risk assessment is questionable due to the limited predictivity for human cancer risk, especially with regard to NGTxCs. Thus, there is an urgent need for a transition to new approach methodologies (NAMs), integrating human-relevant in vitro assays and in silico tools that better exploit the current knowledge of the multiple processes involved in carcinogenesis into a modern safety assessment toolbox. Here, we describe an integrative project that aims to use a variety of novel approaches to detect the carcinogenic potential of NGTxCs based on different mechanisms and pathways involved in carcinogenesis. The aim of this project is to contribute suitable assays for the safety assessment toolbox for an efficient and improved, internationally recognized hazard assessment of NGTxCs, and ultimately to contribute to reliable mechanism-based next-generation risk assessment for chemical carcinogens.

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Firefighters and the liver: Exposure to PFAS and PAHs in relation to liver function and serum lipids (CELSPAC-FIREexpo study)
Authors
Pálešová Nina, Maitre Léa, Stratakis Nikos, Řiháčková Katarína, Pindur Aleš, Kohoutek Jiri, Šenk Petr , Bartoskova Polcrova Anna, Petr Gregor, Vrijheid Martine, Čupr Pavel
Journal
International Journal of Hygiene and Environmental Health
Vol. 252
114215
Keywords
Firefighters, Occupational exposure, PFAS, PAHs, Mixture analysis, Liver Function
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Introduction: Firefighting is one of the most hazardous occupations due to exposure to per- and polyfluoroalkyl substances (PFAS) and polycyclic aromatic hydrocarbons (PAHs). Such exposure is suspected to affect the cardiometabolic profile, e.g., liver function and serum lipids. However, only a few studies have investigated the impact of this specific exposure among firefighters. 

Methods: Men included in the CELSPAC-FIREexpo study were professional firefighters (n = 52), newly recruited firefighters in training (n = 58), and controls (n = 54). They completed exposure questionnaires and provided 1–3 samples of urine and blood during the 11-week study period to allow assessment of their exposure to PFAS (6 compounds) and PAHs (6 compounds), and to determine biomarkers of liver function (alanine aminotransferase (ALT), gamma-glutamyl transferase (GGT), aspartate aminotransferase (AST), alkaline phosphatase (ALP) and total bilirubin (BIL)) and levels of serum lipids (total cholesterol (CHOL), low-density lipoprotein cholesterol (LDL) and triglycerides (TG)). The associations between biomarkers were investigated both cross-sectionally using multiple linear regression (MLR) and Bayesian weighted quantile sum (BWQS) regression and prospectively using MLR. The models were adjusted for potential confounders and false discovery rate correction was applied to account for multiplicity.

Results: A positive association between exposure to PFAS and PAH mixture and BIL (β = 28.6%, 95% CrI = 14.6–45.7%) was observed by the BWQS model. When the study population was stratified, in professional firefighters and controls the mixture showed a positive association with CHOL (β = 29.5%, CrI = 10.3–53.6%) and LDL (β = 26.7%, CrI = 8.3–48.5%). No statistically significant associations with individual compounds were detected using MLR.

Conclusions: This study investigated the associations between exposure to PFAS and PAHs and biomarkers of cardiometabolic health in the Czech men, including firefighters. The results suggest that higher exposure to a mixture of these compounds is associated with an increase in BIL and the alteration of serum lipids, which can result in an unfavourable cardiometabolic profile.

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Environmental concentrations of tire rubber-derived 6PPD-quinone alter CNS function in zebrafish larvae
Authors
Ricarte Marina, Prats Eva, Montemurro Nicola, Bedrossiantz Juliette, Marina Bellot Marina, Gómez-Canela Cristian, Raldúa Demetrio
Journal
Science of the Total Environment
Vol. 896
165240
Keywords
6PPD-quinone, Tire rubber, Zebrafish larvae, Neurotoxicity, Circadian rhythms
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N-(1,3-Dimethylbutyl)-N′-phenyl-p-phenylenediamine quinone (6PPD-quinone) is a degradation product of 6PPD, an antioxidant widely used in rubber tires. 6PPD-quinone enters aquatic ecosystems through urban stormwater runoff and has been identified as the chemical behind the urban runoff mortality syndrome in coho salmon. However, the available data suggest that the acute effects of 6PPD-quinone are restricted to a few salmonid species and that the environmental levels of this chemical should be safe for most fish. In this study, larvae of a “tolerant” fish species, Danio rerio, were exposed to three environmental concentrations of 6PPD-quinone for only 24 h, and the effects on exploratory behavior, escape response, nonassociative learning (habituation), neurotransmitter profile, wake/sleep cycle, circadian rhythm, heart rate and oxygen consumption rate were analyzed. Exposure to the two lowest concentrations of 6PPD-quinone resulted in altered exploratory behavior and habituation, an effect consistent with some of the observed changes in the neurotransmitter profile, including increased levels of acetylcholine, norepinephrine, epinephrine and serotonin. Moreover, exposure to the highest concentration tested altered the wake/sleep cycle and the expression of per1aper3 and cry3a, circadian clock genes involved in the negative feedback loop. Finally, a positive chronotropic effect of 6PPD-quinone was observed in the hearts of the exposed fish. The results of this study emphasize the need for further studies analyzing the effects of 6PPD-quinone in “tolerant” fish species.

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Development of a rat physiologically based kinetic model (PBK) for three organophosphate flame retardants (TDCIPP, TCIPP, TCEP)
Journal
Toxicology Letters
Vol. 383
No. 2023
128-140
Keywords
Models, Human health
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Tris(1,3-dichloro-2-propyl) phosphate (TDCIPP), Tris (1-chloro-2-propyl) phosphate (TCIPP) and tris (2-chloroethyl) phosphate (TCEP) are three widely used organophosphate flame retardants (OPFRs) being frequently detected in human body fluids. Although OPFRs are being detected in human beings, the toxicological effects of their exposure are not clearly understood due to limited data. For this, a physiologically based kinetic model (PBK) was developed in MCSIM integrated with R studio and validated in rats to understand the toxicokinetics of OPFRs for the first time. The model required the enterohepatic recirculation (EHR) mechanism which was included to explain the non-linear data. Model parameters were optimized using the Bayesian framework (Markov Chain Monte Carlo) along with a visual fitting to explain toxicokinetic data. Goodness-of-fit was calculated to evaluate model predictability power in Rstudio. The model can appropriately predict the concentration of OPFRs in several organs like plasma, urine, kidney, etc. within 1–2-fold of experimental data. Slow elimination of OPFRs was observed from adipose tissue and brain at late time points, showing their potential to accumulate upon daily exposure. The use of PBK was demonstrated by reconstructing the oral exposure equivalent to the in-vitro toxic dose to support neurotoxic risk assessment. This version of PBK can be extrapolated to human for toxicological risk assessment. Nonetheless, further investigation is required to understand whether these chemicals follow similar kinetics in humans, which could lead to a greater risk to human health.

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Development of new approach methods for the identification and characterization of endocrine metabolic disruptors—a PARC project
Authors
Braeuning Albert, Balaguer Patrick, Bourguet William, Carreras-Puigvert Jordi, Feiertag Katreece, Kamstra Jorke H., Knapen Dries, Lichtenstein Dajana, Marx-Stoelting Philip, Rietdijk Jonne, Schubert Kristin, Spjuth Ola, Stinckens Evelyn, Thedieck Kathrin, Van den Boom Rik, Vergauwen Lucia, Von Bergen Martin, Wewer Neele, Zalko Daniel
Journal
Frontiers in Toxicology
Vol. 5
1212509
Keywords
Adipocytes, Endocrine metabolic disruption, Energy metabolism, Liver, Nuclear receptors, Obesogens
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In past times, the analysis of endocrine disrupting properties of chemicals has mainly been focused on (anti-)estrogenic or (anti-)androgenic properties, as well as on aspects of steroidogenesis and the modulation of thyroid signaling. More recently, disruption of energy metabolism and related signaling pathways by exogenous substances, so-called metabolism-disrupting chemicals (MDCs) have come into focus. While general effects such as body and organ weight changes are routinely monitored in animal studies, there is a clear lack of mechanistic test systems to determine and characterize the metabolism-disrupting potential of chemicals. In order to contribute to filling this gap, one of the project within EU-funded Partnership for the Assessment of Risks of Chemicals (PARC) aims at developing novel in vitro methods for the detection of endocrine metabolic disruptors. Efforts will comprise projects related to specific signaling pathways, for example, involving mTOR or xenobiotic-sensing nuclear receptors, studies on hepatocytes, adipocytes and pancreatic beta cells covering metabolic and morphological endpoints, as well as metabolism-related zebrafish-based tests as an alternative to classic rodent bioassays. This paper provides an overview of the approaches and methods of these PARC projects and how this will contribute to the improvement of the toxicological toolbox to identify substances with endocrine disrupting properties and to decipher their mechanisms of action.

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Determination of glyphosate and its derivative, aminomethylphosphonic acid, in human urine by gas chromatography coupled to tandem mass spectrometry and isotope pattern deconvolution
Journal
Journal of Chromatography Open
Vol. 4
100087
Keywords
Polar pesticides, Isotope dilution, Biomonitoring, Gas chromatography, Tandem mass spectrometry in negative ion chemical ionization
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An analytical method for the simultaneous determination of glyphosate (GLY) and its main derivative, aminomethyl-phosphonic acid (AMPA), in human urine has been developed using gas chromatography coupled to tandem mass spectrometry (MS/MS) operated in multiple reaction monitoring mode (MRM). Sample preparation involved dilution of urine with water and derivatization with a mixture of trifluoroacetic acid anhydride and trifluoroethanol. Derivatization conditions such as reaction time and temperature, derivative stability, injection solvent, MS ionization mode and MS-MS transitions, among others, were studied to obtain the highest method sensitivity. The target compounds were initially quantified by the isotope dilution method using isotopically labelled analogs of GLY and AMPA as internal standards. However, due to spectral overlap between GLY and labelled GLY in the selected quantitative transition, a quantification method based on isotope pattern deconvolution (IPD) has been developed. The instrumental limits of detection were 0.05 ng mL−1 for both compounds, while the method detection limits were 0.39 and 0.25 ng mL−1, for AMPA and GLY, respectively. The mean recoveries from urine and water spiked at different concentrations were 77 and 69% for AMPA and 90 and 102% for GLY, respectively, with mean relative standard deviations of 8–10% (urine samples, n = 12) and 3.6–4% (water samples, n = 6). Once validated, the feasibility of the method was tested by determination of AMPA and GLY in human urine samples from people living close to agricultural areas. The developed method affords the determination of these compounds at trace concentrations in complex matrices such as urine, avoiding elaborate handling and cleanup steps. Isotope pattern deconvolution has proven to be a successful alternative to calibration curve for GLY overriding the method uncertainties associated to spectral overlapping.

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Mixtures of per- and poly-fluoroalkyl substances (PFAS) reduce the in vitro activation of human T cells and basophils
Authors
Maddalon Ambra, Pierzchalski Arkadiusz, Kretschmer Tobias, Bauer Mario, Zenclussen Ana C., Marinovich Marina, Corsini Emanuela, Herberth Gunda
Journal
Chemosphere
Vol. 336
139204
Keywords
PFAS, Mixtures, Immunotoxicity, T lymphocytes, MAIT cells, Basophils
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In the last decades, per- and poly-fluoroalkyl substances (PFAS), widely used industrial chemicals, have been in the center of attention because of their omnipotent presence in water and soils worldwide. Although efforts have been made to substitute long-chain PFAS towards safer alternatives, their persistence in humans still leads to exposure to these compounds. PFAS immunotoxicity is poorly understood as no comprehensive analyses on certain immune cell subtypes exist. Furthermore, mainly single entities and not PFAS mixtures have been assessed. In the present study we aimed to investigate the effect of PFAS (short-chain, long-chain and a mixture of both) on the in vitro activation of primary human immune cells. Our results show the ability of PFAS to reduce T cells activation. In particular, exposure to PFAS affected T helper cells, cytotoxic T cells, Natural Killer T cells, and Mucosal associated invariant T (MAIT) cells, as assessed by multi-parameter flow cytometry. Furthermore, the exposure to PFAS reduced the expression of several genes involved in MAIT cells activation, including chemokine receptors, and typical proteins of MAIT cells, such as GZMB, IFNG and TNFSF15 and transcription factors. These changes were mainly induced by the mixture of both short- and long-chain PFAS. In addition, PFAS were able to reduce basophil activation induced by anti-FcεR1α, as assessed by the decreased expression of CD63. Our data clearly show that the exposure of immune cells to a mixture of PFAS at concentrations mimicking real-life human exposure resulted in reduced cell activation and functional changes of primary innate and adaptive human immune cells.

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PBTK-TD model of the phagocytosis activity in three-spined stickleback exposed to BPA
Authors
Mit Corentin, Bado-Nilles Annes, Turies Cyril, Gaëlle Daniele, Barbara Giroud, Beaudouin Rémy
Journal
Aquatic Toxicology
Vol. 261
106608
Keywords
PBTK-TD model, Immunomarker, Phagocytosis, Fish, BPA, Three-spined stickleback
Date of publication
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Due to the high production volume and persistence in the environment of bisphenol A (BPA) and its substitutes, realistic exposure scenarii were proposed in some species to better understand the relationship between external and internal concentrations. For example, a recent PBTK model has been developed and adapted to BPA ADME (Absorption, Distribution, Metabolization, and Excretion) processes in three-spined stickleback. These substances have an impact on organism physiology including reproductive and immune functions. In this context, physiologically-based toxicokinetic models coupled with toxicodynamics (PBTK-TD) have proven to be valuable tools to fill the knowledge gap between external exposure and effect dynamics. The aim of the current work was to explain the impact of BPA on the immune response by determining its temporality. In addition, the relationship between BPA dose and these responses was investigated using a PBTK-TD model. Two experiments were performed on stickleback to characterize their biomarker responses, (i) a short exposure (14 days) at 0, 10 and 100 µg/L, including a depuration phase (7 days), and (ii) a long exposure (21 days) at 100 µg/L to measure the immunomarker dynamic over a long period. The fish spleens were sampled to analyze immune responses of stickleback at various times of exposure and depuration: leucocyte distribution, phagocytic capacity and efficiency, lysosomal presence and leucocyte respiratory burst index. At the same date, blood, muscle, and liver were sampled to quantify BPA and their metabolites (BPA monoglucuronide and BPA monosulfate). All these data enabled the development of the indirect pharmacodynamic models (PBTK-TD) by implementing the responses of biomarkers in the existing BPA PBTK of stickleback. The results shown a high induction of phagocytosis activity by BPA in the two exposure conditions. Furthermore, the immunomarkers exhibit very different temporal dynamics. This study demonstrates the need of a thorough characterization of biomarker response for a further use in Environmental Biomonitoring.

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FAIR environmental and health registry (FAIREHR)- supporting the science to policy interface and life science research, development and innovation
Authors
Jeddi Maryam Zare, Galea Karen S., Viegas Susana, Fantke Peter, Louro Henriqueta, Theunis Jan, Govarts Eva, Denys Sébastien, Fillol Clémence, Rambaud Loïc, Kolossa-Gehring Marike, Santonen Tiina, van der Voet Hilko, Ghosh Manosij, Costa Carla, Teixeira João Paulo, Verhagen Hans, Duca Radu-Corneliu, Van Nieuwenhuyse An, Jones Kate, Sams Craig, Sepai Ovnair, Tranfo Giovanna, Bakker Martine, Palmen Nicole, van Klaveren Jacob, Scheepers Paul T. J., Paini Alicia, Canova Cristina, von Goetz Natalie, Katsonouri Andromachi, Karakitsios Spyros, Sarigiannis Dimosthenis A., Bessems Jos, Machera Kyriaki, Harrad Stuart, Hopf Nancy B.
Journal
Frontiers in Toxicology
Vol. 5
1116707
Keywords
Open science, Preregistration, Environmental medicine, Metadata, Exposure science, Data-driven decision making, Exposure-disease continuum, Real-world data
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The environmental impact on health is an inevitable by-product of human activity. Environmental health sciences is a multidisciplinary field addressing complex issues on how people are exposed to hazardous chemicals that can potentially affect adversely the health of present and future generations. Exposure sciences and environmental epidemiology are becoming increasingly data-driven and their efficiency and effectiveness can significantly improve by implementing the FAIR (findable, accessible, interoperable, reusable) principles for scientific data management and stewardship. This will enable data integration, interoperability and (re)use while also facilitating the use of new and powerful analytical tools such as artificial intelligence and machine learning in the benefit of public health policy, and research, development and innovation (RDI). Early research planning is critical to ensuring data is FAIR at the outset. This entails a well-informed and planned strategy concerning the identification of appropriate data and metadata to be gathered, along with established procedures for their collection, documentation, and management. Furthermore, suitable approaches must be implemented to evaluate and ensure the quality of the data. Therefore, the ‘Europe Regional Chapter of the International Society of Exposure Science’ (ISES Europe) human biomonitoring working group (ISES Europe HBM WG) proposes the development of a FAIR Environment and health registry (FAIREHR) (hereafter FAIREHR). FAIR Environment and health registry offers preregistration of studies on exposure sciences and environmental epidemiology using HBM (as a starting point) across all areas of environmental and occupational health globally. The registry is proposed to receive a dedicated web-based interface, to be electronically searchable and to be available to all relevant data providers, users and stakeholders. Planned Human biomonitoring studies would ideally be registered before formal recruitment of study participants. The resulting FAIREHR would contain public records of metadata such as study design, data management, an audit trail of major changes to planned methods, details of when the study will be completed, and links to resulting publications and data repositories when provided by the authors. The FAIREHR would function as an integrated platform designed to cater to the needs of scientists, companies, publishers, and policymakers by providing user-friendly features. The implementation of FAIREHR is expected to yield significant benefits in terms of enabling more effective utilization of human biomonitoring (HBM) data.

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AOP-helpFinder 2.0: Integration of an event-event searches module
Authors
Jaylet Thomas, Coustillet Thibaut, Jornod florence, Margaritte-Jeannin Patricia, Audouze Karine
Journal
Environment International
Vol. 177
108017
Keywords
Adverse outcome pathways, AOP, AOP-helpFinder, Text mining, Artificial intelligence, Toxicology
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To support the use of alternative methods in regulatory assessment of chemical risks, the concept of adverse outcome pathway (AOP) constitutes an important toxicological tool. AOP represents a structured representation of existing knowledge, linking molecular initiating event (MIE) initiated by a prototypical stressor that leads to a cascade of biological key event (KE) to an adverse outcome (AO). Biological information to develop such AOP is very dispersed in various data sources. To increase the chance of capturing relevant existing data to develop a new AOP, the AOP-helpFinder tool was recently implemented to assist researchers to design new AOP. Here, an updated version of AOP-helpFinder proposes novel functionalities. The main one being the implementation of an automatic screening of the abstracts from the PubMed database to identify and extract event-event associations. In addition, a new scoring system was created to classify the identified co-occurred terms (stressor-event or event-event (which represent key event relationships) to help prioritization and support the weight of evidence approach, allowing a global assessment of the strength and reliability of the AOP. Moreover, to facilitate interpretation of the results, visualization options are also proposed. The AOP-helpFinder source code are fully accessible via GitHub, and searches can be performed via a web interface at http://aop-helpfinder-v2.u-paris-sciences.fr/.

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Non-disclosure of developmental neurotoxicity studies obstructs the safety assessment of pesticides in the European Union
Journal
Environmental Health
Vol. 22
44
Keywords
Developmental neurotoxicity, Non-disclosure, Pesticides, Plant protection products, Regulatory assessment, Reporting bias
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In the European Union (EU), the safety assessment of plant protection products relies to a large extent on toxicity studies commissioned by the companies producing them. By law, all performed studies must be included in the dossier submitted to authorities when applying for approval or renewal of the active substance.

For one type of toxicity, i.e. developmental neurotoxicity (DNT), we evaluated if studies submitted to the U.S. Environmental Protection Agency (EPA) had also been disclosed to EU authorities.

We identified 35 DNT studies submitted to the U.S. EPA and with the corresponding EU dossiers available. Of these, 9 DNT studies (26%) were not disclosed by the pesticide company to EU authorities. For 7 of these studies, we have identified an actual or potential regulatory impact.

We conclude that (1) non-disclosure of DNT studies to EU authorities, in spite of clear legal requirements, seems to be a recurring phenomenon, (2) the non-disclosure may introduce a bias in the regulatory risk assessment, and (3) without full access to all performed toxicity studies, there can be no reliable safety evaluation of pesticides by EU authorities. We suggest that EU authorities should cross-check their data sets with their counterparts in other jurisdictions. In addition, applications for pesticide approval should be cross-checked against lists of studies performed at test facilities operating under Good Laboratory Practice (GLP), to ensure that all studies have been submitted to authorities. Furthermore, rules should be amended so that future studies should be commissioned by authorities rather than companies. This ensures the authorities’ knowledge of existing studies and prevents the economic interest of the company from influencing the design, performance, reporting and dissemination of studies. The rules or practices should also be revised to ensure that non-disclosure of toxicity studies carries a significant legal risk for pesticide companies.

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G × E interactions as a basis for toxicological uncertainty
Authors
Suciu Ilinca, Pamies David, Peruzzo Roberta, Wirtz Petra H., Smirnova Lena, Pallocca Giorgia, Hauck Christof, Cronin Mark T. D., Hengstler Jan G., Brunner Thomas, Hartung Thomas, Amelio Ivano, Leist Marcel
Journal
Archives of Toxicology
Vol. 97
No. 7
2035–2049
Keywords
Epigenetics, Model system, Safety factor, Toxicokinetics, Résilience, AOP
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To transfer toxicological findings from model systems, e.g. animals, to humans, standardized safety factors are applied to account for intra-species and inter-species variabilities. An alternative approach would be to measure and model the actual compound-specific uncertainties. This biological concept assumes that all observed toxicities depend not only on the exposure situation (environment = E), but also on the genetic (G) background of the model (G × E). As a quantitative discipline, toxicology needs to move beyond merely qualitative G × E concepts. Research programs are required that determine the major biological variabilities affecting toxicity and categorize their relative weights and contributions. In a complementary approach, detailed case studies need to explore the role of genetic backgrounds in the adverse effects of defined chemicals. In addition, current understanding of the selection and propagation of adverse outcome pathways (AOP) in different biological environments is very limited. To improve understanding, a particular focus is required on modulatory and counter-regulatory steps. For quantitative approaches to address uncertainties, the concept of “genetic” influence needs a more precise definition. What is usually meant by this term in the context of G × E are the protein functions encoded by the genes. Besides the gene sequence, the regulation of the gene expression and function should also be accounted for. The widened concept of past and present “gene expression” influences is summarized here as Ge. Also, the concept of “environment” needs some re-consideration in situations where exposure timing (Et) is pivotal: prolonged or repeated exposure to the insult (chemical, physical, life style) affects Ge. This implies that it changes the model system. The interaction of Ge with Et might be denoted as Ge × Et. We provide here general explanations and specific examples for this concept and show how it could be applied in the context of New Approach Methodologies (NAM).

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A review on immudolatory effects of BPA analogues
Authors
Sollner Dolenc Marija, Franko Nina, Kodila Anja
Journal
Archives of Toxicology
Vol. 97
1831–1846
Keywords
BPA analogues, Immunomodulation, Immunotoxicology, Endocrine disruptors, Bisphenols
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Bisphenol A (BPA) is a known endocrine disruptor found in many consumer products that humans come into contact with on a daily basis. Due to increasing concerns about the safety of BPA and the introduction of new legislation restricting its use, industry has responded by adopting new, less studied BPA analogues that have similar polymer-forming properties. Some BPA analogues have already been shown to exhibit effects similar to BPA, for example, contributing to endocrine disruption through agonistic or antagonistic behaviour at various nuclear receptors such as estrogen (ER), androgen (AR), glucocorticoid (GR), aryl hydrocarbon (AhR), and pregnane X receptor (PXR). Since the European Food Safety Authority (EFSA) issued a draft re-evaluation of BPA and drastically reduced the temporary tolerable daily intake (t-TDI) of BPA from 4 mg/kg body weight/day to 0.2 ng/kg body weight/day due to increasing concern about the toxic properties of BPA, including its potential to disrupt immune system processes, we conducted a comprehensive review of the immunomodulatory activity of environmentally abundant BPA analogues. The results of the review suggest that BPA analogues may affect both the innate and acquired immune systems and can contribute to various immune-mediated conditions such as hypersensitivity reactions, allergies, and disruption of the human microbiome.

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New approach methods to improve human health risk assessment of thyroid hormone system disruption - a PARC project
Authors
Ramhøj Louise, Axelstad Marta, Baert Yoni, Cañas-Portilla. Ana I., Chalmel Frederic, Dahmen Lars, De La Veja Antonio, Evrard Bertrand, Haigis Ann-Cathrin, Hamers Timo, Heikamp Kim, Holbech Henrik, Iglesias-Hernandez Patricia, Knapen Dries, Marchandise Lorna, Morthorst Jane E., Nikolov Nikolai Georgiev, Nissen Ana C. V. E., Oelgeschlaeger Michael, Renko Kostja, Rogiers Vera, Schüürmann Gerrit, Stinckens Evelyn, Stub Mette H., Torres-Ruiz Monica, Van Duursen Majorie, Vanhaecke Tamara, Vergauwen Lucia, Wedebye Eva Bay, Svingen Terje
Journal
Frontiers in Toxicology
Vol. 5
1189303
Keywords
PARC, Endocrine disruption, Thyroid disruption, Non-animal test methods, Regulatory toxicology, Adverse outcome pathways, Chemicals
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Current test strategies to identify thyroid hormone (TH) system disruptors are inadequate for conducting robust chemical risk assessment required for regulation. The tests rely heavily on histopathological changes in rodent thyroid glands or measuring changes in systemic TH levels, but they lack specific new approach methodologies (NAMs) that can adequately detect TH-mediated effects. Such alternative test methods are needed to infer a causal relationship between molecular initiating events and adverse outcomes such as perturbed brain development. Although some NAMs that are relevant for TH system disruption are available – and are currently in the process of regulatory validation – there is still a need to develop more extensive alternative test batteries to cover the range of potential key events along the causal pathway between initial chemical disruption and adverse outcomes in humans. This project, funded under the Partnership for the Assessment of Risk from Chemicals (PARC) initiative, aims to facilitate the development of NAMs that are specific for TH system disruption by characterizing in vivo mechanisms of action that can be targeted by in embryo/in vitro/in silico/in chemico testing strategies. We will develop and improve human-relevant in vitro test systems to capture effects on important areas of the TH system. Furthermore, we will elaborate on important species differences in TH system disruption by incorporating non-mammalian vertebrate test species alongside classical laboratory rat species and human-derived in vitro assays.

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Molecular and functional characterization of different brain sphere models for use in neurotoxicity testing on microelectrode arrays
Authors
Hartmann Julia, Henschel Noah, Bartmann Kristina, Dönmez Arif, Brockerhoff Gabriele, Koch Katharina, Fritsche Ellen
Journal
Cells
Vol. 12
No. 9
1270
Keywords
HiPSCs, Organoids, Neural induction, Neural differentiation, Brain, In vitro, Neural network, BrainSphere, Multielectrode arrays (MEA), PARC
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The currently accepted methods for neurotoxicity (NT) testing rely on animal studies. However, high costs and low testing throughput hinder their application for large numbers of chemicals. To overcome these limitations, in vitro methods are currently being developed based on human-induced pluripotent stem cells (hiPSC) that allow higher testing throughput at lower costs. We applied six different protocols to generate 3D BrainSphere models for acute NT evaluation. These include three different media for 2D neural induction and two media for subsequent 3D differentiation resulting in self-organized, organotypic neuron/astrocyte microtissues. All induction protocols yielded nearly 100% NESTIN-positive hiPSC-derived neural progenitor cells (hiNPCs), though with different gene expression profiles concerning regional patterning. Moreover, gene expression and immunocytochemistry analyses revealed that the choice of media determines neural differentiation patterns. On the functional level, BrainSpheres exhibited different levels of electrical activity on microelectrode arrays (MEA). Spike sorting allowed BrainSphere functional characterization with the mixed cultures consisting of GABAergic, glutamatergic, dopaminergic, serotonergic, and cholinergic neurons. A test method for acute NT testing, the human multi-neurotransmitter receptor (hMNR) assay, was proposed to apply such MEA-based spike sorting. These models are promising tools not only in toxicology but also for drug development and disease modeling.

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Rapid extraction and analysis of oxidative stress and DNA damage biomarker 8-hydroxy-2′-deoxyguanosine (8-OHdG) in urine: Application to a study with pregnant women
Authors
Bláhová Lucie, Janoš Tomáš, Mustieles Vicente, Rodríguez-Carrillo Andrea, Fernández Mariana F., Bláha Luděk
Journal
International Journal of Hygiene and Environmental Health
Vol. 250
114175
Keywords
8-OHdG, Urine, Oxidative stress, Placenta, Pregnancy
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Oxidative stress is an important toxicity and genotoxicity mechanism of many chronic adverse health outcomes. This study developed a sensitive extraction method for urine matrix (based on lyophilization, without the need for pre-cleaning by solid phase extraction), coupled to LC-MS/MS analysis of the biomarker 8-hydroxy-2′-deoxyguanosine (8-OHdG). The methodology was validated in urine samples from a cohort of Spanish pregnant women collected during the first, second and third trimester of pregnancy, and urine samples collected within 24 h after delivery (n = 85). A detection and quantification limit of 0.01 and 0.05 μg/L, respectively, were established. The median 8-OHdG concentration was 2.18 μg/L (range 0.33–7.79); and the corresponding creatinine-adjusted concentrations ranged from 1.04 to 13.12 with median of 4.48 μg 8-OHdG/g creatinine. The concentrations of non-adjusted 8-OHdG significantly decreased (p < 0.05) in the 3rd trimester and post-delivery urine samples when compared to the 1st trimester levels. 8-OHdG concentrations were further studied in placenta samples matching the same urine samples (n = 26), with a median value of 1.3 ng 8-OHdG/g of tissue. Placental 8-OHdG concentrations were correlated with urinary levels of non-adjusted 8-OHdG in the 3rd trimester. Considering the small cohort size, results must be interpreted with caution, however statistical analyses revealed elevated urinary non-adjusted 8-OHdG levels in the 1st trimester of mothers that delivered boys compared to those who delivered girls (p < 0.01). Increased urinary non-adjusted 8-OHdG concentrations at the time of delivery were significantly associated with clinical records (any type of clinical record during pregnancy; p < 0.05). The novel extraction and analytical method for the assessment of 8-OHdG is applicable for sensitive analysis of multiple analytes or biomarkers in urine matrix. This method could also be applied for other matrices such as blood or tissues. Our findings show that 8-OHdG in urine of pregnant women could predict oxidative stress in placenta and can be related to characteristics such as maternal obesity, mode of delivery and newborn sex.

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The exposure of Czech firefighters to perfluoroalkyl substances and polycyclic aromatic hydrocarbons: CELSPAC – FIREexpo case-control human biomonitoring study
Authors
Katarína Řiháčková, Aleš Pindur, Klára Komprdová, Nina Pálešová, Jiří Kohoutek, Petr Šenk, Jana Navrátilová, Lenka Andrýsková, Ludmila Šebejová, Richard Hůlek, Mazen Ismael, Pavel Čupr
Journal
Science of The Total Environment
Vol. 881
163298
Keywords
Firefighters, Human biomonitoring, Perfluoroalkyl substances, Polycyclic aromatic hydrocarbons, Cohort profile, HBM value
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The CELSPAC - FIREexpo biomonitoring study investigates the long-term effects of chemical exposure on firefighters' wellness and fitness. It aims to provide science-based measures to minimize the health risks of the firefighting occupation. Here, we present the study design, cohort profile, and first results with respect to internal per- and polyfluoroalkyl substances (PFAS) and polycyclic aromatic hydrocarbons (PAH) levels in study participants. Participants (n = 166) were divided into three subcohorts: i) newly recruited firefighters, ii) professional firefighters with several years' experience, and iii) the control group. Participants underwent physical performance tests, provided information on their lifestyle and diet, and urine and blood samples 1-4 times within an 11-week period. 12 serum PFAS and 10 urinary hydroxylated PAH (OH-PAH) levels were determined using HPLC-MS/MS and compared between subcohorts and samplings. The association of internal exposure with reported lifestyles and occupational factors was investigated using Spearman's correlation, principal component analysis, and multivariate regression analysis. ΣPFAS levels in firefighters were significantly higher than in the control group and were mostly associated with the length of firefighting career, age, blood donation, and population size. 10.9 % and 7.6 % of measurements exceeded the HBM-I or HBM-II value for PFOS and PFOA, respectively. Urinary ΣPAH levels increased significantly after training with burning wooden pallets, but none of them exceeded the no observed genotoxic effect level. Firefighters' occupational exposure, its sources, and pathways, need to be systematically monitored and investigated on a long-term and individual basis. The CELSPAC - FIREexpo study helps to clarify the degree of occupational exposure to the given compounds and the subsequent risks to firefighters.

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Cover
Authors
Escher Beate I., Altenburger Rolf, Blüher Matthias, Colbourne John K., Ebinghaus Ralf, Fantke Peter, Hein Michaela, Köck Wolfgang, Kümmerer Klaus, Leipold Sina, Li Xiaojing, Scheringer Martin, Scholz Stefan, Schloter Michael, Schweizer Pia-Johanna, Tal Tamara, Tetko Igor, Traidl-Hoffmann Claudia, Wick Lukas Y., Fenner Kathrin
Journal
Archives of Toxicology
Vol. 97
1267–1283
Keywords
Hazard assessment, New approach methodologies (NAMs), Persistence, Mobility, Biodegradation, In vitro bioassay, Toxicity
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The assessment of persistence (P), bioaccumulation (B), and toxicity (T) of a chemical is a crucial first step at ensuring
chemical safety and is a cornerstone of the European Union’s chemicals regulation REACH (Registration, Evaluation,
Authorization, and Restriction of Chemicals). Existing methods for PBT assessment are overly complex and cumbersome,
have produced incorrect conclusions, and rely heavily on animal-intensive testing. We explore how new-approach methodologies (NAMs) can overcome the limitations of current PBT assessment. We propose two innovative hazard indicators, termed cumulative toxicity equivalents (CTE) and persistent toxicity equivalents (PTE). Together they are intended to replace existing PBT indicators and can also accommodate the emerging concept of PMT (where M stands for mobility). The proposed “toxicity equivalents” can be measured with high throughput in vitro bioassays. CTE refers to the toxic effects measureddirectly in any given sample, including single chemicals, substitution products, or mixtures. PTE is the equivalent measureof cumulative toxicity equivalents measured after simulated environmental degradation of the sample. With an appropriate panel of animal-free or alternative in vitro bioassays, CTE and PTE comprise key environmental and human health hazard indicators. CTE and PTE do not require analytical identification of transformation products and mixture components but instead prompt two key questions: is the chemical or mixture toxic, and is this toxicity persistent or can it be attenuated by environmental degradation? Taken together, the proposed hazard indicators CTE and PTE have the potential to integrate P, B/M and T assessment into one high-throughput experimental workflow that sidesteps the need for analytical measurements and will support the Chemicals Strategy for Sustainability of the European Union.

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Carnosic acid ameliorates indomethacin-induced gastric ulceration in rats by alleviating oxidative stress and inflammation
Authors
Danisman Betul, Cicek Betul, Yildirim Serkan, Bolat Ismail, Kantar Deniz, Golokhvast Kirill S., Nikitovic Dragana, Tsatsakis Aristidis, Taghizadehghalehjoughi Ali
Journal
Biomedicins
Vol. 11
No. 3
829
Keywords
Indometacin, Gastric ulcer, Carnosic acid, Inflammation, Oxidative stress
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Nonsteroidal anti-inflammatory drugs (NSAIDs) such as aspirin and indomethacin (IND) are the most commonly prescribed for inflammation or pain. However, widespread use causes several adverse effects, such as gastric ulcers, upper gastric system bleeding, and erosions. Carnosic acid (CA) is an important natural antioxidant found in rosemary (Rosmarinus essentials) and exhibits a protective effect by suppressing oxidative stress and inflammation. This study aimed to investigate the impact of CA on IND-induced gastric ulceration. Wistar male rats received CA (100 mg/kg) or esomeprazole (ESP) (20 mg/kg, standard drug) by oral gavage for 14 days, after that gastric ulceration was induced by oral administration of 100 mg/kg IND. CA pretreatment attenuated both gross morphological lesions and histopathological alterations. CA strongly reduced IND-induced oxidative stress, verified by a decrease in MDA (p < 0.001) and TOS levels (p < 0.05). Furthermore, an IND-dependent increase in CAT (p < 0.001) and GPx (p < 0.01) activities, as well as a reduction in GSH levels (p < 0.01), were ameliorated by CA pretreatment. CA also attenuated inflammatory damage by suppressing IL-1β (p < 0.01), IL-6 (p < 0.01), and TNFα (p < 0.001) production and increasing Nrf2/HO-1 (p < 0.05) expressions. In conclusion, CA shows a gastroprotective effect by reducing oxidative stress and attenuating inflammation.

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Cover_development
Authors
Mikeš Ondřej, Sáňka Ondřej, Rafajová Aneta, Vlaanderen Jelle, Chen Jie, Hoek Gerard, Klánová Jana, Čupr Pavel
Journal
Atmospheric Environment
Vol. 301
119688
Keywords
Land use regression, Air quality, Cohort, Vulnerable windows, Children's health, ELSPAC
Date of publication
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Vulnerable windows in child development in utero and after birth are critical time points for uncovering the links between environment and health. Particular attention is paid to the first 1000 days of life from conception to the second year of life. The ELSPAC (European Longitudinal Study of Pregnancy and Childhood) birth cohort, launched in the early 1990s, is a rich source of longitudinal data about health and life events, based mainly in Brno, Czechia. There are currently no air quality concentration maps that can be used to assess exposure to air pollutants for this period of the 1990s in Central Europe. Simply transferring current models to the 1990’s is burdened with the error introduced by the temporal change in emission sources and land use of the area. Therefore, Czech air quality monitoring data were used to develop monthly land use regression (LUR) models, which combine collected spatial variables with monitoring data to predict the variation in exposures to pollutants. Monthly pollutant concentrations were regressed against the GIS-based potential predictor variables to develop LUR models, following a supervised forward linear regression, with several predefined constraints. We constructed 180 LUR monthly models for sulphur dioxide (SO2), nitrogen oxides (NOx) and suspended particulate matter (SPM) for 1990–1994, that completely cover the first 1000 days for all ELSPAC study participants. The final models showed, on average reasonably good performance (adjusted R2 = 0.59 with hold-out validation (HOV) R2 = 0.40 for SO2; adjusted R2 = 0.75 with HOV R2 = 0.35 for NOx; and adjusted R2 = 0.61 with HOV R2 = 0.31 for SPM; with a mean number of stations of 74, 38 and 41, respectively). For these models, roads and greenness were predominantly selected as the best predictors. The modelled exposures will serve in many subsequent ELSPAC epidemiological studies, but our models may be also used in other Czech and possibly other Central European cities in that period.

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Cover_The Role of “Physiologically Based Pharmacokinetic Model (PBPK)” New Approach Methodology (NAM) in Pharmaceuticals and Environmental Chemical Risk Assessment
Journal
International Journal of Environmental Research and Public Health
Vol. 20
3473
Keywords
Physiologically based pharmacokinetic model, Drugs, Environmental chemicals, Adverse outcome pathway, Machine learning
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Physiologically Based Pharmacokinetic (PBPK) models are mechanistic tools generally employed in the pharmaceutical industry and environmental health risk assessment. These models are recognized by regulatory authorities for predicting organ concentration–time profiles, pharmacokinetics and daily intake dose of xenobiotics. The extension of PBPK models to capture sensitive populations such as pediatric, geriatric, pregnant females, fetus, etc., and diseased populations such as those with renal impairment, liver cirrhosis, etc., is a must. However, the current modelling practices and existing models are not mature enough to confidently predict the risk in these populations. A multidisciplinary collaboration between clinicians, experimental and modeler scientist is vital to improve the physiology and calculation of biochemical parameters for integrating knowledge and refining existing PBPK models. Specific PBPK covering compartments such as cerebrospinal fluid and the hippocampus are required to gain mechanistic understanding about xenobiotic disposition in these sub-parts. The PBPK model assists in building quantitative adverse outcome pathways (qAOPs) for several endpoints such as developmental neurotoxicity (DNT), hepatotoxicity and cardiotoxicity. Machine learning algorithms can predict physicochemical parameters required to develop in silico models where experimental data are unavailable. Integrating machine learning with PBPK carries the potential to revolutionize the field of drug discovery and development and environmental risk. Overall, this review tried to summarize the recent developments in the in-silico models, building of qAOPs and use of machine learning for improving existing models, along with a regulatory perspective. This review can act as a guide for toxicologists who wish to build their careers in kinetic modeling.

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Cover_Proteome Coverage after Simultaneous Proteo-Metabolome Liquid–Liquid Extraction
Authors
Alienke van Pijkeren, Anna-Sophia Egger, Madlen Hotze, Elisabeth Zimmermann, Tobias Kipura, Julia Grander, André Gollowitzer, Andreas Koeberle, Rainer Bischoff, Kathrin Thedieck, Marcel Kwiatkowski
Journal
Journal of Proteome Research
Vol. 22
No. 3
951-966
Keywords
Proteomics, Metabolomics, Sample preparation, Simultaneous proteo-metabolomics, In-solution digest, SP3, Mass spectrometry, Label free quantification, Bottom-up proteomics
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Proteomics and metabolomics are essential in systems biology, and simultaneous proteo-metabolome liquid–liquid extraction (SPM-LLE) allows isolation of the metabolome and proteome from the same sample. Since the proteome is present as a pellet in SPM-LLE, it must be solubilized for quantitative proteomics. Solubilization and proteome extraction are critical factors in the information obtained at the proteome level. In this study, we investigated the performance of two surfactants (sodium deoxycholate (SDC), sodium dodecyl sulfate (SDS)) and urea in terms of proteome coverage and extraction efficiency of an interphase proteome pellet generated by methanol–chloroform based SPM-LLE. We also investigated how the performance differs when the proteome is extracted from the interphase pellet or by direct cell lysis. We quantified 12 lipids covering triglycerides and various phospholipid classes, and 25 polar metabolites covering central energy metabolism in chloroform and methanol extracts. Our study reveals that the proteome coverages between the two surfactants and urea for the SPM-LLE interphase pellet were similar, but the extraction efficiencies differed significantly. While SDS led to enrichment of basic proteins, which were mainly ribosomal and ribonuclear proteins, urea was the most efficient extraction agent for simultaneous proteo-metabolome analysis. The results of our study also show that the performance of surfactants for quantitative proteomics is better when the proteome is extracted through direct cell lysis rather than an interphase pellet. In contrast, the performance of urea for quantitative proteomics was significantly better when the proteome was extracted from an interphase pellet than by direct cell lysis. We demonstrated that urea is superior to surfactants for proteome extraction from SPM-LLE interphase pellets, with a particularly good performance for the extraction of proteins associated with metabolic pathways. Data are available via ProteomeXchange with identifier PXD027338.

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Linking chemicals, genes and morphological perturbations to diseases
Authors
Cerisier Natacha, Dafniet Bryan, Badel Anne, Taboureau Olivier
Journal
Toxicology and Applied Pharmacology
Vol. 461
116407
Keywords
Cell painting, Chemical risk assessment, Integrated approaches, Networks, Innovative methods and tools
Date of publication
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The progress in image-based high-content screening technology has facilitated high-throughput phenotypic profiling notably the quantification of cell morphology perturbation by chemicals. However, understanding the mechanism of action of a chemical and linking it to cell morphology and phenotypes remains a challenge in drug discovery. In this study, we intended to integrate molecules that induced transcriptomic perturbations and cellular morphological changes into a biological network in order to assess chemical-phenotypic relationships in humans. Such a network was enriched with existing disease information to suggest molecular and cellular profiles leading to phenotypes. Two datasets were used for this study. Firstly, we used the “Cell Painting morphological profiling assay” dataset, composed of 30,000 compounds tested on human osteosarcoma cells (named U2OS). Secondly, we used the “L1000 mRNA profiling assay” dataset, a collection of transcriptional expression data from cultured human cells treated with approximately 20,000 bioactive small molecules from the Library of Integrated Network-based Cellular Signatures (LINCS). Furthermore, pathways, gene ontology terms and disease enrichments were performed on the transcriptomics data. Overall, our study makes it possible to develop a biological network combining chemical-gene-pathwaymorphological perturbation and disease relationships. It contains an ensemble of 9989 chemicals, 732 significant morphological features and 12,328 genes. Through diverse examples, we demonstrated that some drugs shared similar genes, pathways and morphological profiles that, taken together, could help in deciphering chemical-phenotype observations.

 

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Cover_Metabolism-Disrupting Chemicals Affecting the Liver: Screening, Testing, and Molecular Pathway Identification
Authors
Kristin Fritsche, Andrea Ziková-Kloas, Philip Marx-Stoelting, Albert Braeuning
Journal
International Journal of Molecular Sciences
Vol. 24
No. 3
2686
Keywords
Endocrine-disrupting chemicals, Metabolic disorders, Testing, Molecular pathways
Date of publication
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The liver is the central metabolic organ of the body. The plethora of anabolic and catabolic pathways in the liver is tightly regulated by physiological signaling but may become imbalanced as a consequence of malnutrition or exposure to certain chemicals, so-called metabolic endocrine disrupters, or metabolism-disrupting chemicals (MDCs). Among different metabolism-related diseases, obesity and non-alcoholic fatty liver disease (NAFLD) constitute a growing health problem, which has been associated with a western lifestyle combining excessive caloric intake and reduced physical activity. In the past years, awareness of chemical exposure as an underlying cause of metabolic endocrine effects has continuously increased. Within this review, we have collected and summarized evidence that certain environmental MDCs are capable of contributing to metabolic diseases such as liver steatosis and cholestasis by different molecular mechanisms, thereby contributing to the metabolic syndrome. Despite the high relevance of metabolism-related diseases, standardized mechanistic assays for the identification and characterization of MDCs are missing. Therefore, the current state of candidate test systems to identify MDCs is presented, and their possible implementation into a testing strategy for MDCs is discussed.

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Cover_A walk in the PARC: developing and implementing 21st century chemical risk assessment in Europe
Authors
P. Marx-Stoelting, G. Rivière, K. Aiello-Holden, N. Bandow, K. Baken, A. Cañas, A. Castano, S. Denys, C. Fillol, M. Herzler, I. Iavicoli, S. Karakitsios, J. Klanova, M. Kolossa-Gehring, A. Koutsodimou, J. Lobo Vicente, I. Lynch, S. Namorado, S. Norager, A. Pittman, S. Rotter, D. Sarigiannis, M. J. Silva, J. Theunis, T. Tralau, M. Uhl, J. van Klaveren, L. Wendt-Rasch, E. Westerholm, C. Rousselle, P. Sanders
Journal
Archives of Toxicology
Vol. 97
893–908
Keywords
Next-generation risk assessment (NGRA), Chemicals, Safety assessment, Exposure assessment, Hazard characterisation, Human biomonitoring (HBM), New approach methods (NAM)
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Current approaches for the assessment of environmental and human health risks due to exposure to chemical substances have served their purpose reasonably well. Nevertheless, the systems in place for different uses of chemicals are faced with various challenges, ranging from a growing number of chemicals to changes in the types of chemicals and materials produced. This has triggered global awareness of the need for a paradigm shift, which in turn has led to the publication of new concepts for chemical risk assessment and explorations of how to translate these concepts into pragmatic approaches. As a result, next-generation risk assessment (NGRA) is generally seen as the way forward. However, incorporating new scientific insights and innovative approaches into hazard and exposure assessments in such a way that regulatory needs are adequately met has appeared to be challenging. The European Partnership for the Assessment of Risks from Chemicals (PARC) has been designed to address various challenges associated with innovating chemical risk assessment. Its overall goal is to consolidate and strengthen the European research and innovation capacity for chemical risk assessment to protect human health and the environment. With around 200 participating organisations from all over Europe, including three European agencies, and a total budget of over 400 million euro, PARC is one of the largest projects of its kind. It has a duration of seven years and is coordinated by ANSES, the French Agency for Food, Environmental and Occupational Health & Safety.

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Dynamic metabolic and transcriptional responses of proteasome-inhibited neurons
Authors
Suciu Ilinca, Delp Johannes, Gutbier Simon, Ückert Anna-Katharina, Spreng Anna-Sophie, Eberhard Philipp, Karreman Christiaan, Schreiber Falk, Madjar Katrin, Rahnenführer Jörg, Celardo Ivana, Amelio Ivano, Leist Marcel
Journal
Antioxidants
Vol. 12
No. 1
164
Keywords
Chemical risk assessment , Hazard assessment, Innovative methods and tools , Integrated approaches
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Proteasome inhibition is associated with parkinsonian pathology in vivo and degeneration of dopaminergic neurons in vitro. We explored here the metabolome (386 metabolites) and transcriptome (3257 transcripts) regulations of human LUHMES neurons, following exposure to MG-132 [100 nM]. This proteasome inhibitor killed cells within 24 h but did not reduce viability for 12 h. Overall, 206 metabolites were changed in live neurons. The early (3 h) metabolome changes suggested a compromised energy metabolism. For instance, AMP, NADH and lactate were up-regulated, while glycolytic and citric acid cycle intermediates were down-regulated. At later time points, glutathione-related metabolites were up-regulated, most likely by an early oxidative stress response and activation of NRF2/ATF4 target genes. The transcriptome pattern confirmed proteostatic stress (fast up-regulation of proteasome subunits) and also suggested the progressive activation of additional stress response pathways. The early ones (e.g., HIF-1, NF-kB, HSF-1) can be considered a cytoprotective cellular counter-regulation, which maintained cell viability. For instance, a very strong up-regulation of AIFM2 (=FSP1) may have prevented fast ferroptotic death. For most of the initial period, a definite life–death decision was not taken, as neurons could be rescued for at least 10 h after the start of proteasome inhibition. Late responses involved p53 activation and catabolic processes such as a loss of pyrimidine synthesis intermediates. We interpret this as a phase of co-occurrence of protective and maladaptive cellular changes. Altogether, this combined metabolomics–transcriptomics analysis informs on responses triggered in neurons by proteasome dysfunction that may be targeted by novel therapeutic intervention in Parkinson’s disease.

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Adverse (geno)toxic effects of bisphenol A and its analogues in hepatic 3D cell model
Authors
Sendra Marta, Štampar Martina, Fras Katarina, Novoa Beatriz, Figueras Antonio, Žegura Bojana
Journal
Environment International
Vol. 171
107721
Keywords
BPA analogues, Cell proliferation, DNA strand breaks, Genotoxic, In vitro 3D cell model
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Bisphenol A (BPA) is one of the most widely used and versatile chemical compounds in polymer additives and epoxy resins for manufacturing a range of products for human applications. It is known as endocrine disruptor, however, there is growing evidence that it is genotoxic. Because of its adverse effects, the European Union has restricted its use to protect human health and the environment. As a result, the industry has begun developing BPA analogues, but there are not yet sufficient toxicity data to claim that they are safe. We investigated the adverse toxic effects of BPA and its analogues (BPS, BPAP, BPAF, BPFL, and BPC) with emphasis on their cytotoxic and genotoxic activities after short (24-h) and prolonged (96-h) exposure in in vitro hepatic three-dimensional cell model developed from HepG2 cells. The results showed that BPFL and BPC (formed by an additional ring system) were the most cytotoxic analogues that affected cell viability, spheroid surface area and morphology, cell proliferation, and apoptotic cell death. BPA, BPAP, and BPAF induced DNA double-strand break formation (γH2AX assay), whereas BPAF and BPC increased the percentage of p-H3-positive cells, indicating their aneugenic activity. All BPs induced DNA single-strand break formation (comet assay), with BPAP (≥0.1 μM) being the most effective and BPA and BPC the least effective (≥1 μM) under conditions applied. The results indicate that not all of the analogues studied are safer alternatives to BPA and thus more in-depth research is urgently needed to adequately evaluate the risks of BPA analogues and assess their safety for humans.

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Cover_Advancing exposure knowledge and its uptake into policy: The European exposure science strategy 2020–2030 (Special Issue)
Journal
Environment International
Vol. 172
107692
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Exposure science is an emerging field focusing on all aspects concerning the contact between chemical, biological, physical or psycho-social stressors and human and ecological receptors. With that, exposure science is central in protecting human and ecosystem health and contributes to the global transition towards green and sustainable societies. Recent advancement in exposure science has been huge. Today, the coverage of exposure methodologies extends from local microenvironments to cities worldwide, and enables, for example, aggregated characterization of population exposure to indoor and outdoor sources, geospatial pollutant source-to-exposure analysis, or integrated assessments of urban and country level climate change abatement policies, In Europe, however, exposure science is not yet sufficiently recognized as a scientific field, resulting in disconnected scientific advancements, underrepresentation in academia, and ineffective uptake into policies and decision support. In response, the wider European exposure science community developed an overarching ‘European Exposure Science Strategy 2020–2030’, as a coordinated effort under the guidance of the ‘Europe Regional Chapter of the International Society of Exposure Science’ (ISES Europe). All strategy elements are published open access and are available to guide the wider European and global exposure science community on its journey to advance relevant exposure knowledge and help implementing it into related policies. Furthermore, the published strategy elements are the basis of the ongoing work in the ISES Europe Working Groups, which can build on the defined overarching goals and concrete action plans. With that, the strategy enables exposure science to develop its full potential as a key discipline in protecting human and ecosystem health, and facilitating a sustainable transition of our society in Europe and worldwide.

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Cover_Considering degradation kinetics of pesticides in plant uptake models: Proof of concept for potato
Journal
Pest Management Science
Vol. 79
No. 3
1154-1163
Keywords
Dissipation, Degradation rate constant, Plant protection product, Pesticide residues
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Degradation kinetics of pesticides in plants are crucial for modeling mechanism-based pesticide residual concentrations. However, due to complex open-field conditions that involve multiple pesticide plant uptake and elimination processes, it is difficult to directly measure degradation kinetics of pesticides in plants. To address this limitation, we proposed a modeling approach for estimating degradation rate constants of pesticides in plants, using potato as a model crop. An operational tool was developed to backward-estimate degradation rate constants, and three pesticides were selected to perform example simulations.
The simulation results of thiamethoxam indicated that the growth dynamics of the potato had a significant impact on the degradation kinetic estimates when the pesticide was applied during the early growth stage, as the size of the potato determined the uptake and elimination kinetics via diffusion. Using mepiquat, we demonstrated that geographical variations in weather conditions and soil properties led to significant differences in the dissipation kinetics in both potato plants and soil, which propagated the variability of the degradation rate constant. Simulation results of chlorpyrifos differed between two reported field studies, which is due to the effect of the vertical distribution of the residue concentration in the soil, which is not considered in the majority of recent studies.
Our proposed approach is adaptable to plant growth dynamics, preharvest intervals, and multiple pesticide application events. In future research, it is expected that the proposed method will enable region-specific inputs to improve the estimation of the degradation kinetics of pesticides in plants. 

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Cover_Generating environmental sampling and testing data for micro- and nanoplastics for use in life cycle impact assessment
Authors
Askham Cecilia, Pauna Valentina H., Boulay Anne-Marie, Fantke Peter, Jolliet Olivier, Lavoie Jérôme, Booth Andy M., Coutris Claire, Verones Francesca, Weber Miriam, Vijver Miriam G., Lusher Amy, Hajjar Carla
Journal
Science of the Total Environment
Vol. 859
No. 2
160038
Keywords
Microplastics, Nanoplastics, Life cycle assessment, Risk assessment, Ecotoxicology, Harmonizing data collection, Monitoring
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Ongoing efforts focus on quantifying plastic pollution and describing and estimating the related magnitude of exposure and impacts on human and environmental health. Data gathered during such work usually follows a receptor perspective. However, Life Cycle Assessment (LCA) represents an emitter perspective. This study examines existing data gathering and reporting approaches for field and laboratory studies on micro- and nanoplastics (MNPs) exposure and effects relevant to LCA data inputs. The outcomes indicate that receptor perspective approaches do not typically provide suitable or sufficiently harmonised data. Improved design is needed in the sampling, testing and recording of results using harmonised, validated and comparable methods, with more comprehensive reporting of relevant data. We propose a three-level set of requirements for data recording and reporting to increase the potential for LCA studies and models to utilise data gathered in receptor-oriented studies. We show for which purpose such data can be used as inputs to LCA, particularly in life cycle impact assessment (LCIA) methods. Implementing these requirements will facilitate proper integration of the potential environmental impacts of plastic losses from human activity (e.g. litter) into LCA. Then, the impacts of plastic emissions can eventually be connected and compared with other environmental issues related to anthropogenic activities.

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Cover_Establishment of a human cell-based in vitro battery to assess developmental neurotoxicity hazard of chemicals
Authors
Jonathan Blum, Stefan Masjosthusmann, Kristina Bartmann, Farina Bendt, Xenia Dolde, Arif Dönmez, Nils Förster, Anna-Katharina Holzer, Ulrike Hübenthal, Hagen Eike Keßel, Sadiye Kilic, Jördis Klose, Melanie Pahl, Lynn-Christin Stürzl, Iris Mangas, Andrea Terron, Kevin M. Crofton, Martin Scholze, Axel Mosig, Marcel Leist, Ellen Fritsche
Journal
Chemosphere
Vol. 311
No. 2
137035
Keywords
Testing battery, Stem cell, Brain development, In vitro testing, DNT
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Developmental neurotoxicity (DNT) is a major safety concern for all chemicals of the human exposome. However, DNT data from animal studies are available for only a small percentage of manufactured compounds. Test methods with a higher throughput than current regulatory guideline methods, and with improved human relevance are urgently needed. We therefore explored the feasibility of DNT hazard assessment based on new approach methods (NAMs). An in vitro battery (IVB) was assembled from ten individual NAMs that had been developed during the past years to probe effects of chemicals on various fundamental neurodevelopmental processes. All assays used human neural cells at different developmental stages. This allowed us to assess disturbances of: (i) proliferation of neural progenitor cells (NPC); (ii) migration of neural crest cells, radial glia cells, neurons and oligodendrocytes; (iii) differentiation of NPC into neurons and oligodendrocytes; and (iv) neurite outgrowth of peripheral and central neurons. In parallel, cytotoxicity measures were obtained. The feasibility of concentration-dependent screening and of a reliable biostatistical processing of the complex multi-dimensional data was explored with a set of 120 test compounds, containing subsets of pre-defined positive and negative DNT compounds. The battery provided alerts (hit or borderline) for 24 of 28 known toxicants (82% sensitivity), and for none of the 17 negative controls. Based on the results from this screen project, strategies were developed on how IVB data may be used in the context of risk assessment scenarios employing integrated approaches for testing and assessment (IATA).

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Cover_Advancing exposure data analytics and repositories as part of the European Exposure Science Strategy 2020–2030
Authors
Kosnik Marissa, Kephalopoulos Stylianos, Muñoz Amalia, Aurisano Nicolò, Cusinato Alberto, Dimitroulopoulou Sani, Slobodnik Jaroslav, De Mello Jonathan, Zare Jeddi Maryam, Cascio Claudia, Ahrens Andreas, Bruinen de Bruin Yuri, Lieck Lothar, Fantke Peter
Journal
Environment International
Vol. 170
107610
Keywords
International Society of Exposure Science, Data analysis, Data management, Chemicals, Exposure assessment, Risk assessment
Date of publication
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High-quality and comprehensive exposure-related data are critical for different decision contexts, including environmental and human health monitoring, and chemicals risk assessment and management. However, exposure-related data are currently scattered, frequently of unclear quality and structure, not readily accessible, and stored in various—partly overlapping—data repositories, leading to inefficient and ineffective data usage in Europe and globally. We propose strategic guidance for an integrated European exposure data production and management framework for use in science and policy, building on current and future data analysis and digitalization trends. We map the existing exposure data landscape to requirements for data analytics and repositories across European policies and regulations. We further identify needs and ways forward for improving data generation, sharing, and usage, and translate identified needs into an operational action plan for European and global advancement of exposure data for policies and regulations. Identified key areas of action are to develop consistent exposure data standards and terminology for data production and reporting, increase data transparency and availability, enhance data storage and related infrastructure, boost automation in data management, increase data integration, and advance tools for innovative data analysis. Improving and streamlining exposure data generation and uptake into science and policy is crucial for the European Chemicals Strategy for Sustainability and European Digital Strategy, in line with EU Data policies on data management and interoperability.

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Cover_Endocrine disrupting chemicals entering European rivers: Occurrence and adverse mixture effects in treated wastewater
Authors
Finckh Saskia, Buchinger Sebastian, Escher Beate, Hollert Henner, König Maria, Krauss Martin, Leekitratanapisan Warich, Schiwy Sabrina, Schlichting Rita, Shuliakevich Aliaksandra, Brack Werner
Journal
Environment International
Vol. 170
107610
Keywords
Endocrine disrupting chemicals, EDC, Wastewater treatment plant effluents, WWTP, Chemical target analysis, Effect-based analysis, Water quality assessment, Effect based trigger values, EBT
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In the present study on endocrine disrupting chemicals (EDCs) in treated wastewater, we used chemical and effect-based tools to analyse 56 wastewater treatment plant (WWTP) effluents from 15 European countries. The main objectives were (i) to compare three different receptor-based estrogenicity assays (ERα-GeneBLAzer, p-YES, ERα-CALUX®), and (ii) to investigate a combined approach of chemical target analysis and receptor-based testing for estrogenicity, glucocorticogenic activity, androgenicity and progestagenic activity (ERα-, GR-, ARand PR-GeneBLAzer assays, respectively) in treated wastewater. A total of 56 steroids and phenols were detected at concentrations ranging from 25 pg/L (estriol, E3) up to 2.4 μg/L (cortisone). WWTP effluents, which passed an advanced treatment via ozonation or via activated carbon, were found to be less contaminated, in terms of lower or no detection of steroids and phenols, as well as hormone receptor-mediated effects. This result was confirmed by the effect screening, including the three ERα-bioassays. In the GeneBLAzer assays, ERα-activity was detected in 82 %, and GR-activity in 73 % of the samples, while AR- and PR-activity were only measured in 14 % and 21 % of the samples, respectively. 17β-estradiol was confirmed as the estrogen dominating the observed estrogenic mixture effect and triamcinolone acetonide was the dominant driver of glucocorticogenic activity. The comparison of bioanalytical equivalent concentrations (BEQ) predicted from the detected concentrations and the relative effect potency (BEQchem) with measured BEQ (BEQbio) demonstrated good correlations of chemical target analysis and receptor-based testing results with deviations mostly within a factor of 10. Bioassay-specific effect-based trigger values (EBTs) from the literature, but also newly calculated EBTs based on previously proposed derivation options, were applied and allowed a preliminary assessment of the water quality of the tested WWTP effluent samples. Overall, this study demonstrates the high potential of linking chemical with effect-based analysis in water quality assessment with regard to EDC contamination.

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Cover_Application of AOPs to assist regulatory assessment of chemical risks – Case studies, needs and recommendations
Authors
Lola Bajard, Ondrej Adamovsky, Karine Audouze, Kirsten Baken, Robert Barouki, Joost B. Beltman, Anna Beronius, Eva Cecilie Bonefeld-Jørgensen, German Cano-Sancho, Milo L. de Baat, Filippo Di Tillio, Mariana F. Fernández, Rex E. FitzGerald, Claudia Gundacker, Antonio F. Hernández, Klara Hilscherova, Spyros Karakitsios, Eliska Kuchovska, Manhai Long, Mirjam Luijten, Sanah Majid, Philip Marx-Stoelting, Vicente Mustieles, Chander K. Negi, Dimosthenis Sarigiannis, Stefan Scholz, Iva Sovadinova, Rob Stierum, Shihori Tanabe, Knut Erik Tollefsen, Annick D. van den Brand, Carolina Vogs, Maria Wielsøe, Clemens Wittwehr, Ludek Blaha
Journal
Environmental Research
Vol. 217
114650
Keywords
Adverse outcome pathways, Mechanistic toxicology, Hazard assessment, Regulatory risk assessment, Biomarkers of effect, New approach methodologies
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While human regulatory risk assessment (RA) still largely relies on animal studies, new approach methodologies (NAMs) based on in vitro, in silico or non-mammalian alternative models are increasingly used to evaluate chemical hazards. Moreover, human epidemiological studies with biomarkers of effect (BoE) also play an invaluable role in identifying health effects associated with chemical exposures. To move towards the next generation risk assessment (NGRA), it is therefore crucial to establish bridges between NAMs and standard approaches, and to establish processes for increasing mechanistically-based biological plausibility in human studies. The Adverse Outcome Pathway (AOP) framework constitutes an important tool to address these needs but, despite a significant increase in knowledge and awareness, the use of AOPs in chemical RA remains limited. The objective of this paper is to address issues related to using AOPs in a regulatory context from various perspectives as it was discussed in a workshop organized within the European Union partnerships HBM4EU and PARC in spring 2022. The paper presents examples where the AOP framework has been proven useful for the human RA process, particularly in hazard prioritization and characterization, in integrated approaches to testing and assessment (IATA), and in the identification and validation of BoE in epidemiological studies. Nevertheless, several limitations were identified that hinder the optimal usability and acceptance of AOPs by the regulatory community including the lack of quantitative information on response-response relationships and of efficient ways to map chemical data (exposure and toxicity) onto AOPs. The paper summarizes suggestions, ongoing initiatives and third-party tools that may help to overcome these obstacles and thus assure better implementation of AOPs in the NGRA.

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Cover_Understanding and addressing the planetary crisis of chemicals and plastics
Authors
Carney Almroth Bethanie, Cornell Sarah E., Diamond Miriam L., de Wit Cynthia A., Fantke Peter, Wang Zhanyun
Journal
One Earth
Vol. 5
No. 10
1070-1074
Date of publication
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Planetary functions are destabilized by the releases of large quantities and numbers of anthropogenic chemicals, which go beyond planetary boundaries and threaten the safe operating space for humanity. Here, we call for urgent action to mitigate these threats and identify opportunities for intervention along the impact pathway of anthropogenic chemicals, including plastics.

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Cover_Framework for defining pesticide maximum residue levels in feed: Applications to cattle and sheep
Journal
Pest Management Science
Vol. 79
No. 2
748-759
Keywords
Plant protection products, Animal husbandry, Livestock health, Food safety, Pesticide regulation
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Pesticide residues in animal feed can endanger animal health and compromise the safety of livestock products for human consumption. Even though policymakers such as the European Union and the World Health Organization have established maximum residue levels (MRLs) for pesticides in both human food and animal feed, there is no systematic management of pesticides in animal feed that considers the entire supply chain. In response, we propose a framework for defining consistent MRLs for pesticides in animal feed that assesses the impact of defined MRLs on upstream (e.g., MRLs in feed crops) and downstream (e.g., MRLs in livestock products) sectors of the livestock-product supply chain.
The MRLs determined for the selected pesticides in the feed of cattle and sheep as case study animals indicate that lipophilic pesticides tend to have lower MRLs than hydrophilic pesticides, primarily due to the relatively high toxicity and biotransfer factors of lipophilic pesticides. In addition, we observe that, primarily for lipophilic pesticides, upstream and downstream regulations are not aligned in terms of defining MRLs in feed using current MRLs in crops with relevance to feed and foods of animal origin.
Some of the current pesticide regulations in the livestock-product supply chain need to be re-evaluated to ensure that MRLs in the upstream sector (i.e., crops) do not result in unacceptable residues in the downstream sector (i.e., MRLs in livestock products affecting animal and human health). Finally, we provide recommendations for optimizing the derivation of MRLs in feed, including the evaluation of residue fate during feed and food manufacturing processes. 

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Cover_Pharmacophore Modeling Using Machine Learning forScreening the Blood–Brain Barrier Permeation of Xenobiotics
Journal
International Journal of Environmental Research and Public Health
Vol. 19
No. 20
13471
Keywords
Blood–brain barrier, P-glycoprotein, Neurotoxicity, Graph neural network, Machine learning, Pharmacophore
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Daily exposure to xenobiotics affects human health, especially the nervous system, causing neurodegenerative diseases. The nervous system is protected by tight junctions present at the blood–brain barrier (BBB), but only molecules with desirable physicochemical properties can permeate it. This is why permeation is a decisive step in avoiding unwanted brain toxicity and also in developing neuronal drugs. In silico methods are being implemented as an initial step to reduce animal testing and the time complexity of the in vitro screening process. However, most in silico methods are ligand based, and consider only the physiochemical properties of ligands. However, these ligand-based methods have their own limitations and sometimes fail to predict the BBB permeation of xenobiotics. The objective of this work was to investigate the influence of the pharmacophoric features of protein–ligand interactions on BBB permeation. For these purposes, receptor-based pharmacophore and ligand-based pharmacophore fingerprints were developed using docking and Rdkit, respectively. Then, these fingerprints were trained on classical machine-learning models and compared with classical fingerprints. Among the tested footprints, the ligand-based pharmacophore fingerprint achieved slightly better (77% accuracy) performance compared to the classical fingerprint method. In contrast, receptor-based pharmacophores did not lead to much improvement compared to classical descriptors. The performance can be further improved by considering efflux proteins such as BCRP (breast cancer resistance protein), as well as P-gp (P-glycoprotein). However, the limited data availability for other proteins regarding their pharmacophoric interactions is a bottleneck to its improvement. Nonetheless, the developed models and exploratory analysis provide a path to extend the same framework for environmental chemicals, which, like drugs, are also xenobiotics. This research can help in human health risk assessment by a priori screening for neurotoxicity-causing agents.

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Cover_Ecotoxicity characterization of chemicals: Global recommendations and implementation in USEtox
Authors
Owsianiak Mikołaj, Hauschild Michael. Z., Posthuma Leo, Saouter Erwan, Vijver Martina G., Backhaus Thomas, Douziech Mélanie, Schlekat Tamar, Fantke Peter
Journal
Chemosphere
Vol. 310
136807
Keywords
Ecotoxicological impacts, Life cycle assessment, Species sensitivity distribution, Ecosystem exposure, USEtox, Life cycle impact assessment
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Chemicals emitted to the environment affect ecosystem health from local to global scale, and reducing chemical impacts has become an important element of European and global sustainability efforts. The present work advances ecotoxicity characterization of chemicals in life cycle impact assessment by proposing recommendations resulting from international expert workshops and work conducted under the umbrella of the UNEP-SETAC Life Cycle Initiative in the GLAM project (Global guidance on environmental life cycle impact assessment indicators). We include specific recommendations for broadening the assessment scope through proposing to introduce additional environmental compartments beyond freshwater and related ecotoxicity indicators, as well as for adapting the ecotoxicity effect modelling approach to better reflect environmentally relevant exposure levels and including to a larger extent chronic test data. As result, we (1) propose a consistent mathematical framework for calculating freshwater ecotoxicity characterization factors and their underlying fate, exposure and effect parameters; (2) implement the framework into the USEtox scientific consensus model; (3) calculate characterization factors for chemicals reported in an inventory of a life cycle assessment case study on rice production and consumption; and (4) investigate the influence of effect data selection criteria on resulting indicator scores. Our results highlight the need for careful interpretation of life cycle assessment impact scores in light of robustness of underlying species sensitivity distributions. Next steps are to apply the recommended characterization framework in additional case studies, and to adapt it to soil, sediment and the marine environment. Our framework is applicable for evaluating chemicals in life cycle assessment, chemical and environmental footprinting, chemical substitution, risk screening, chemical prioritization, and comparison with environmental sustainability targets.

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Cover_The European exposure science strategy 2020–2030
Authors
Fantke Peter, Bruinen de Bruin Yuri, Schlüter Urs, Connolly Alison, Bessems Jos, Kephalopoulos Stylianos, Zare Yeddi Maryam, van Nieuwenhuyse An, Dudzina Tatsiana, Scheepers Paul, von Goetz Natalie
Journal
Environment International
Vol. 170
107555
Keywords
Human exposure, Ecosystem exposure, Exposure assessment, Risk assessment, Afe and sustainable-by-design, International Society of Exposure Science
Date of publication
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Exposure science is an emerging and rapidly growing field dedicated to all aspects concerning the contact between chemical, biological, physical or psycho-social stressors and human and ecological receptors. With that, exposure science plays a central role in protecting human and ecosystem health, and contributes to the global transition towards a green and sustainable society. In Europe, however, exposure science is currently not sufficiently recognised as a scientific field, resulting in inefficient uptake into policies. In response, the wider European exposure science community developed elements and actions under the auspices of the Europe Regional Chapter of the International Society of Exposure Science (ISES Europe), for identified priority areas, namely education, exposure models, exposure data, human biomonitoring, and policy uptake. In the present document, we synthesize these strategic elements into an overarching ‘European Exposure Science Strategy 2020–2030’, following three strategic objectives that focus on acknowledging exposure science as an independent and interconnected field, harmonizing approaches and tools across regulations, and exploring collaboration, education and funding mechanisms. To operationalise this strategy, we present concrete key actions and propose initiatives and funding options for advancing the underlying science, cultivating broader education and cross-sector exposure knowledge transfer, and fostering effective uptake of exposure information into policy. We aim at anchoring European efforts in the global exposure science context, with a special focus on the interface between scientific advancements, application in decision support, and dissemination and training. This will help to develop exposure science as a strong scientific field with the ultimate goal to successfully assess and manage various stressors across sectors and geographic scales.

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Wild fish and seafood species in the western Mediterranean Sea with low safe mercury concentrations
Journal
Environmental Pollution
Vol. 314
120274
Keywords
Mercury, Mediterranean Sea, Fish, Seafood, Safe species
Date of publication
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A total of 1345 specimens belonging to 58 different species of wild fish and seafood from the western Mediterranean Sea were analyzed to assess total mercury levels and to estimate which species meet the EU recommendations for human consumption (0.5 µg g-1 ww) in all cases. All fish species were caught off the Mediterranean coasts and intended for human consumption. All specimens were collected from local markets located in Spain, Italy and France that sell fish caught by local fishermen (Eivissa, Menorca, Mallorca, Alacant, L’Ampolla, Ametlla de Mar, Marseille, Genoa, Civitavecchia, Alghero) at different time periods. Mercury concentrations were measured by thermal decomposition-gold amalgamator-atomic absorption spectrometry. Only thirteen species were found that did not exceed 0.5 µg g-1 ww in any specimen analyzed. These safe species were sardines (Sardina pilchardus), anchovies (Engraulis encrasicolus), blue whiting (Micromesistius poutassou), picarel (Spicara smaris), blackspot seabream (Pagellus bogaraveo), gilthead seabream (Sparus aurata), pearly razorfish (Xyrichtys novacula), surmullet (Mullus surmuletus), painted comber (Serranus scriba), brown meagre (Sciaena umbra), salema (Sarpa salpa), common dolphinfish (Coryphaena hippurus) and squid (Loligo vulgaris). These species occupy different trophic levels, have different lengths and average weights, but show a low mercury concentration than others living in the same environments. Potential human consumption of these species as sole source of fish would imply estimated weekly intakes representing between 49% and 70% of the recommended provisional tolerable weekly intake of methylmercury in the worst case. Health authorities should pay specific attention to species that do not meet EU thresholds and make appropriate precautionary health recommendations, especially for pregnant women and children.

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Cover_prioritization of chemicals
Journal
Frontiers in Toxicology
Vol. 4
933197
Keywords
High-throughput screening, Monte Carlo Risk Assessment tool, New approach methodologies, Next generation risk assessment, Dietary exposure, Threshold of toxicological concern, Toxicity prediction models
Date of publication
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Next generation risk assessment is defined as a knowledge-driven system that allows for cost-efficient assessment of human health risk related to chemical exposure, without animal experimentation. One of the key features of next generation risk assessment is to facilitate prioritization of chemical substances that need a more extensive toxicological evaluation, in order to address the need to assess an increasing number of substances. In this case study focusing on chemicals in food, we explored how exposure data combined with the Threshold of Toxicological Concern (TTC) concept could be used to prioritize chemicals, both for existing substances and new substances entering the market. Using a database of existing chemicals relevant for dietary exposure we calculated exposure estimates, followed by application of the TTC concept to identify substances of higher concern. Subsequently, a selected set of these priority substances was screened for toxicological potential using high-throughput screening (HTS) approaches. Remarkably, this approach resulted in alerts for a selection of substances that are already on the market and represent relevant exposure in consumers. Taken together, the case study provides proof-of-principle for the approach taken to identify substances of concern, and this approach can therefore be considered a supportive element to a next generation risk assessment strategy.

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Occupational and residential exposures to organophosphate and pyrethroid pesticides in a rural setting
Journal
Environmental Research
Vol. 214, Part 4
114186
Keywords
Farmworker, Occupational exposure, Organophosphate pesticides, Pyrethroids, Personal protective equipment, Urinary metabolites, Rural area
Date of publication
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Organophosphate (OP) and pyrethroid pesticides (PYR) are extensively used in agriculture, resulting in higher exposures among farmworkers. The present study reports the occurrence of 8 urinary OP and PYR metabolites in a sample of farmworkers and residents from Sucs (n=87), a rural township in North West Catalonia. The aim of the present study was to examine differences in urinary pesticide metabolite concentrations between occupationally-exposed (farmworkers; n=45) and environmentally-exposed subjects (n=42) and to assess the relationship between pesticide’s exposures and occupational activities in a real-case scenario.

Six OP and two PYR metabolites have been investigated, urine samples were extracted using SPE extraction and analysed by UPLC-MS/MS. Three OP metabolites were commonly detectable in urine, namely TCPY (metabolite of chlorpyrifos), PNP (parathion) and DEAMPY (pirimiphos). Regarding pyrethroids, the two analyzed metabolites, 3-PBA and 4F-3-PBA, were detected in a high proportion of urine samples. Differences in concentrations between both groups were statistically significant for TCPY and 4F-3-PBA (Mann-Whitney U Test for independent groups, p<0.05). In the case of TCPY, the concentrations were higher among the farmworkers, which is consistent with their occupational activity. The small differences found in DEAMPY, PNP, 3-PBA or even the significant higher concentrations of 4F-3-PBA among rural population suggest a general exposure to these compounds, even in those who do not carry an occupational activity.

Specific personal protective equipment (PPE) among farmworkers, such as the use of gloves and mask during mixing, showed a decrease in the exposure levels, although the differences were not statistically significant. However, a positive association was found between the use of a cap during mixing (for PNP and 3-PBA) and during application (only for 3-PBA). However, this piece of cloth is mainly used for sun protection, and when not cleaned after the handling of pesticides, it might represent a continuous source of exposure through dermal contact. Farmworkers using tractors with cabin had statistically significant lower concentrations of DEAMPY than those using a tractor without cabin. The previous results suggest that occupational protections should be encouraged among farmworkers and other potential workers handling with pesticides.

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Cover_Cardiac PI3K p110α attenuation delays aging and extends lifespan
Authors
Abdellatif Mahmoud, Eisenberg Tobias, Heberle Alexander Martin, Thedieck Kathrin, Kroemer Guido, Sedej Simon
Journal
Cell Stress
Vol. 6
No. 8
72-75
Keywords
PI3K, IGF1, Insulin signaling, Cardiomyopathy, Heart failure, Aging, Autophagy, Mitochondrial dysfunction
Date of publication
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Phosphoinositide 3-kinase (PI3K) is a key component of the insulin signaling pathway that controls cellular metabolism and growth. Loss-of-function mutations in PI3K signaling and other downstream effectors of the insulin signaling pathway extend the lifespan of various model organisms. However, the pro-longevity effect appears to be sex-specific and young mice with reduced PI3K signaling have increased risk of cardiac disease. Hence, it remains elusive as to whether PI3K inhibition is a valid strategy to delay aging and extend healthspan in humans. We recently demonstrated that reduced PI3K activity in cardiomyocytes delays cardiac growth, causing subnormal contractility and cardiopulmonary functional capacity, as well as increased risk of mortality at young age. In stark contrast, in aged mice, experimental attenuation of PI3K signaling reduced the agedependent decline in cardiac function and extended maximal lifespan, suggesting a biphasic effect of PI3K on cardiac health and survival. The cardiac anti-aging effects of reduced PI3K activity coincided with enhanced oxidative phosphorylation and required increased autophagic flux. In humans, explanted failing hearts showed increased PI3K signaling, as indicated by increased phosphorylation of the serine/threonine-protein kinase AKT. Hence, late-life cardiac-specific targeting of PI3K might have a therapeutic potential in cardiac aging and related diseases.

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Cover_exposure
Authors
Šulc Libor, Janoš Tomáš, Figueiredo Daniel, Ottenbros Ilse, Šenk Petr, Mikeš Ondřej, Huss Anke, Čupr Pavel
Journal
Environmental Research
Vol. 214
No. 3
114002
Keywords
Pyrethroids, Chlorpyrifos, Tebuconazole, Urine, HBM4EU, Cumulative Risk Assessment
Date of publication
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Current-use pesticides (CUP) are extensively applied in both agricultural and urban settings. Exposure occurs mainly via the dietary pathway; however, other pathways such as inhalation or skin contact are also important. In this study, urinary levels of 12 CUP metabolites were investigated among 110 parent-child pairs during two seasons of 2020. Metabolites of pyrethroids (3-PBA, t/c-DCCA), chlorpyrifos (TCPY), and tebuconazole (TEB-OH) were detected in more than 60% of the samples. Chlorpyrifos metabolite was found at the highest concentration and tebuconazole was detected in almost all samples. CUP urinary metabolite levels were significantly higher in children in comparison to adults, except for tebuconazole, which was similar in both groups. In children, winter samples had significantly higher concentrations of pyrethroid and chlorpyrifos metabolites in comparison to the summer samples, but in adults, only chlorpyrifos metabolite concentrations were higher in the winter.  No association between CUP urinary metabolite levels and proximity/surface of agricultural areas around residences was observed. Based on our findings, we suspect that CUP exposure is mainly driven by diet and that the effect of environmental exposure is less significant. Daily Intakes were estimated with three possible scenarios considering the amount of the metabolite excreted in urine and were compared to Acceptable Daily Intake values. Using a realistic scenario, exposure to chlorpyrifos exhibited the highest health risk, but still within a safe level. The Acceptable Daily Intake was exceeded only in one child in the case of cypermethrin. The cumulative risk assessment of pesticide mixtures having an effect on the nervous system, based on the total margin of exposure calculations, did not indicate any risk. The overall risk associated with pesticide exposure in the observed population was low. However, the risk observed using the worst-case scenario suggests the need for continuous evaluation of human exposure to such compounds, especially in children.

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AI for predicting chemical-effect associations at the chemical universe level — deepFPlearn
Authors
Schor Jana, Scheibe Patrick, Bernt Bernt, Busch Wibke, Lai Chih, Hackermüller Jörg
Journal
Briefings in Bioinformatics
Vol. 23
No. 5
1-11
Keywords
Deep learning, Toxicology, Binary fingerprint, Autoencoder, Molecular structures
Date of publication
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Many chemicals are present in our environment, and all living species are exposed to them. However, numerous chemicals pose risks, such as developing severe diseases, if they occur at the wrong time in the wrong place. For the majority of the chemicals, these risks are not known. Chemical risk assessment and subsequent regulation of use require efficient and systematic strategies. Lab-based methods—even if high throughput—are too slow to keep up with the pace of chemical innovation. Existing computational approaches are designed for specific chemical classes or sub-problems but not usable on a large scale. Further, the application range of these approaches is limited by the low amount of available labeled training data. We present the ready-to-use and stand-alone program deepFPlearn that predicts the association between chemical structures and effects on the gene/pathway level using a combined deep learning approach. deepFPlearn uses a deep autoencoder for feature reduction before training a deep feed-forward neural network to predict the target association. We received good prediction qualities and showed that our feature compression preserves relevant chemical structural information. Using a vast chemical inventory (unlabeled data) as input for the autoencoder did not reduce our prediction quality but allowed capturing a much more comprehensive range of chemical structures. We predict meaningful—experimentally verified—associations of chemicals and effects on unseen data. deepFPlearn classifies hundreds of thousands of chemicals in seconds. We provide deepFPlearn as an open-source and flexible tool that can be easily retrained and customized to different application settings at https://github.com/yigbt/deepFPlearn.

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Environmental and dietary determinants of metal exposure in four-year-old children from a cohort located in an industrial area (Asturias, Northern Spain)
Journal
Environmental Research
Vol. 214, Part 2
113862
Keywords
Metals in urine, Children exposure, Metals and seafood, Oil pollution metals, Red meat consumption and urinary metals, Traffic exposure and urinary metals
Date of publication
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Urine samples from four-year-old children located in a heavily industrialized zone in Asturias (Spain) were collected between 2009-2012 (n = 334). Vanadium (V; median 54 µg/g creatinine), cobalt (Co; 1.0 µg/g c.), nickel (Ni; 3.8 µg/g c.), copper (Cu; 22 µg/g c.), zinc (Zn; 590 µg/g c.), arsenic (As; 64 µg/g c.), selenium (Se; 49 µg/g c.), molybdenum (Mo; 110 µg/g c.), cadmium (Cd; 0.27 µg/g c.), antimony (Sb; 1.0 µg/g c.), cesium (Cs; 14 µg/g c.), barium (Ba; 2.6 µg/g c.), thallium (Tl; 0.55 µg/g c.) and lead (Pb; 1.9 µg/g c.) were analyzed. Comparison with children from other sites showed that this Asturias cohort was characterized by high levels of V, As, Sb, Cs and Tl. The concentrations of Co, Ni, Zn, Cu, Mo, Se, Cd, Ba and Pb were within the range of other cohorts.

Terrestrial dietary items were most strongly related to increased urinary concentrations of metals in children, e.g., red meat with Ba and Ni, pasta/cereal with Ni and Zn, sweets with Zn, Co, and Cu, eggs with Mo, Cd, and Cs, and dairy products with Co and Sb. Seafood was the second group of dietary items significantly related to increased metals, e.g., shellfish with Ba, Cs, Pb, and V, fatty fish with As, and lean fish with As and Se.

 

In contrast, higher fruit intake was significantly associated with decreased Cu and Sb, and higher legume intake with decreased Cu, Se and Cs. Higher intakes of other dietary items also led to significant decreases in some metals, such as vegetables and lower concentrations of Se and Mo, and dairy products with decreases in Cu and As. These negative correlations implied very low concentrations of the mentioned metals in these foods. Higher exposure to traffic was associated with higher concentrations of Ba, present in brake components. Children living outside urban areas had higher concentrations of Se. No association of metals with smoking in the family was found.

 

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